| UniProt: | P39901 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12390 | ||
| Length: | 65 (62) | ||
| Sequences: | 12178 | ||
| Seq/Len: | 196.42 |
| YBFI
Paralog alert: 0.90 [within 20: 0.35] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 12_R | 16_R | 3.611 | 1.00 | |
| 13_Y | 19_Q | 3.508 | 1.00 | |
| 54_I | 64_M | 3.07 | 1.00 | |
| 30_N | 33_R | 2.967 | 1.00 | |
| 56_E | 62_R | 2.929 | 1.00 | |
| 7_C | 42_K | 2.696 | 1.00 | |
| 54_I | 62_R | 2.695 | 1.00 | |
| 6_V | 9_Q | 2.447 | 1.00 | |
| 35_Y | 38_H | 1.989 | 1.00 | |
| 34_N | 37_G | 1.83 | 1.00 | |
| 6_V | 21_X | 1.65 | 1.00 | |
| 5_S | 9_Q | 1.613 | 1.00 | |
| 31_Y | 35_Y | 1.495 | 1.00 | |
| 37_G | 41_Q | 1.489 | 1.00 | |
| 9_Q | 12_R | 1.434 | 1.00 | |
| 13_Y | 20_M | 1.341 | 0.99 | |
| 52_H | 63_F | 1.278 | 0.99 | |
| 15_C | 63_F | 1.242 | 0.98 | |
| 33_R | 57_T | 1.226 | 0.98 | |
| 46_D | 49_R | 1.174 | 0.98 | |
| 5_S | 59_I | 1.108 | 0.96 | |
| 4_L | 42_K | 1.102 | 0.96 | |
| 34_N | 38_H | 1.101 | 0.96 | |
| 8_W | 12_R | 1.092 | 0.96 | |
| 10_I | 35_Y | 1.052 | 0.95 | |
| 6_V | 35_Y | 1.052 | 0.95 | |
| 11_V | 15_C | 1.025 | 0.93 | |
| 47_P | 50_P | 1.023 | 0.93 | |
| 36_M | 61_Y | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2z9mA | 2 | 1 | 99.4 | 0.05 | Contact Map | 0.918 |
| 2k4jA | 1 | 1 | 99.4 | 0.062 | Contact Map | 0.513 |
| 1opcA | 1 | 1 | 99.4 | 0.068 | Contact Map | 0.727 |
| 2hwvA | 1 | 1 | 99.4 | 0.069 | Contact Map | 0.917 |
| 3zq7A | 1 | 1 | 99.4 | 0.082 | Contact Map | 0.81 |
| 3q9vA | 2 | 0.9846 | 99.4 | 0.082 | Contact Map | 0.815 |
| 1gxqA | 1 | 0.9846 | 99.4 | 0.088 | Contact Map | 0.799 |
| 2jzyA | 1 | 0.9846 | 99.4 | 0.092 | Contact Map | 0.559 |
| 2pmuA | 6 | 0.9692 | 99.4 | 0.093 | Contact Map | 0.899 |
| 2gwrA | 1 | 1 | 99.3 | 0.108 | Contact Map | 0.826 |
Sequence Conservation (Image Generated using WebLogo v3)