| UniProt: | P39274 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12467 | ||
| Length: | 90 (88) | ||
| Sequences: | 975 | ||
| Seq/Len: | 11.08 |
| YJDJ
Paralog alert: 0.10 [within 20: 0.01] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 62_R | 87_D | 4.061 | 1.00 | |
| 10_F | 60_K | 3.256 | 1.00 | |
| 54_V | 75_A | 3.108 | 1.00 | |
| 35_I | 75_A | 2.957 | 1.00 | |
| 50_G | 74_F | 2.821 | 1.00 | |
| 35_I | 57_V | 2.649 | 1.00 | |
| 34_I | 71_L | 2.612 | 1.00 | |
| 24_V | 36_E | 2.229 | 1.00 | |
| 77_H | 81_K | 2.11 | 1.00 | |
| 12_I | 49_I | 1.928 | 1.00 | |
| 55_A | 59_E | 1.922 | 1.00 | |
| 58_V | 78_E | 1.853 | 1.00 | |
| 51_K | 74_F | 1.727 | 1.00 | |
| 33_A | 61_M | 1.725 | 1.00 | |
| 22_E | 39_D | 1.626 | 1.00 | |
| 60_K | 64_E | 1.588 | 1.00 | |
| 58_V | 79_F | 1.586 | 1.00 | |
| 39_D | 45_K | 1.57 | 1.00 | |
| 20_I | 44_L | 1.469 | 1.00 | |
| 21_A | 44_L | 1.435 | 1.00 | |
| 61_M | 68_I | 1.364 | 0.99 | |
| 79_F | 89_R | 1.295 | 0.99 | |
| 23_I | 35_I | 1.294 | 0.99 | |
| 27_P | 33_A | 1.289 | 0.99 | |
| 51_K | 55_A | 1.238 | 0.98 | |
| 83_R | 86_D | 1.216 | 0.98 | |
| 35_I | 61_M | 1.208 | 0.98 | |
| 78_E | 82_T | 1.196 | 0.98 | |
| 76_K | 80_D | 1.154 | 0.97 | |
| 44_L | 47_Q | 1.131 | 0.97 | |
| 24_V | 37_H | 1.12 | 0.96 | |
| 32_L | 69_I | 1.12 | 0.96 | |
| 62_R | 88_I | 1.116 | 0.96 | |
| 73_P | 76_K | 1.115 | 0.96 | |
| 54_V | 74_F | 1.106 | 0.96 | |
| 33_A | 66_R | 1.096 | 0.96 | |
| 77_H | 80_D | 1.074 | 0.95 | |
| 51_K | 78_E | 1.069 | 0.95 | |
| 34_I | 69_I | 1.063 | 0.95 | |
| 18_K | 43_S | 1.059 | 0.95 | |
| 21_A | 41_D | 1.049 | 0.94 | |
| 40_V | 49_I | 1.042 | 0.94 | |
| 54_V | 78_E | 1.038 | 0.94 | |
| 59_E | 85_Y | 1.032 | 0.94 | |
| 9_K | 19_Q | 1.025 | 0.93 | |
| 56_K | 59_E | 1.013 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1r57A | 1 | 1 | 99.4 | 0.498 | Contact Map | 0.546 |
| 1xmtA | 1 | 0.9556 | 99.3 | 0.517 | Contact Map | 0.87 |
| 2q04A | 6 | 1 | 97.9 | 0.7 | Contact Map | 0.388 |
| 2i00A | 6 | 0.9889 | 97.9 | 0.7 | Contact Map | 0.473 |
| 1yx0A | 1 | 1 | 97.9 | 0.702 | Contact Map | 0.296 |
| 3d8pA | 2 | 0.9889 | 97.9 | 0.702 | Contact Map | 0.482 |
| 3efaA | 1 | 0.9889 | 97.9 | 0.702 | Contact Map | 0.506 |
| 4my0A | 6 | 0.9889 | 97.8 | 0.704 | Contact Map | 0.474 |
| 2ganA | 2 | 1 | 97.8 | 0.705 | Contact Map | 0.613 |
| 2hv2A | 6 | 0.9778 | 97.8 | 0.706 | Contact Map | 0.414 |
Sequence Conservation (Image Generated using WebLogo v3)