May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YJDF - Inner membrane protein YjdF
UniProt: P39270 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12463
Length: 209 (193)
Sequences: 288
Seq/Len: 1.49

YJDF
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
102_K 177_S 3.016 1.00
29_H 82_K 2.189 0.99
20_I 70_I 2.177 0.99
135_L 139_V 2.051 0.98
102_K 171_D 2.035 0.98
36_M 154_A 1.976 0.98
22_I 26_I 1.955 0.98
82_K 164_D 1.913 0.97
115_V 143_I 1.891 0.97
35_L 42_I 1.874 0.97
38_V 76_G 1.86 0.96
141_L 183_L 1.791 0.95
22_I 49_L 1.762 0.95
197_H 201_L 1.728 0.94
71_I 103_L 1.556 0.89
74_V 83_V 1.551 0.88
71_I 107_F 1.545 0.88
146_M 153_W 1.533 0.88
195_R 198_C 1.5 0.86
51_T 62_Y 1.462 0.84
167_G 189_T 1.458 0.84
21_L 76_G 1.419 0.82
113_A 117_R 1.37 0.78
171_D 177_S 1.343 0.76
34_W 37_E 1.333 0.76
37_E 79_T 1.317 0.74
95_L 99_P 1.314 0.74
31_K 41_V 1.272 0.71
127_R 180_F 1.265 0.70
87_F 99_P 1.255 0.69
40_P 147_Y 1.237 0.68
40_P 76_G 1.234 0.67
72_L 108_Q 1.231 0.67
80_Y 182_A 1.23 0.67
134_F 138_C 1.213 0.65
47_L 188_T 1.209 0.65
23_Y 116_A 1.19 0.63
37_E 166_L 1.185 0.63
99_P 171_D 1.182 0.62
52_A 62_Y 1.179 0.62
19_L 134_F 1.179 0.62
79_T 166_L 1.178 0.62
141_L 145_A 1.174 0.62
68_H 108_Q 1.168 0.61
194_A 199_R 1.168 0.61
59_P 200_Q 1.167 0.61
67_L 71_I 1.167 0.61
118_E 122_R 1.149 0.59
43_I 47_L 1.144 0.59
61_L 111_V 1.143 0.59
34_W 166_L 1.138 0.58
68_H 102_K 1.131 0.57
139_V 143_I 1.131 0.57
44_V 115_V 1.13 0.57
65_I 141_L 1.13 0.57
70_I 74_V 1.129 0.57
28_A 31_K 1.123 0.57
45_V 181_C 1.122 0.56
21_L 25_G 1.117 0.56
80_Y 144_S 1.11 0.55
18_T 47_L 1.11 0.55
83_V 152_W 1.109 0.55
157_A 162_A 1.108 0.55
68_H 72_L 1.085 0.53
73_M 93_L 1.084 0.53
15_L 18_T 1.082 0.52
154_A 158_M 1.081 0.52
99_P 102_K 1.079 0.52
111_V 182_A 1.076 0.52
102_K 126_V 1.064 0.50
144_S 182_A 1.064 0.50
108_Q 143_I 1.063 0.50
146_M 188_T 1.058 0.50
22_I 54_R 1.058 0.50
108_Q 144_S 1.056 0.50
39_T 43_I 1.054 0.49
38_V 73_M 1.054 0.49
48_L 51_T 1.049 0.49
73_M 76_G 1.046 0.49
57_L 162_A 1.042 0.48
18_T 49_L 1.035 0.47
113_A 118_E 1.032 0.47
64_L 107_F 1.032 0.47
74_V 104_G 1.03 0.47
22_I 127_R 1.028 0.47
33_T 40_P 1.028 0.47
189_T 204_F 1.027 0.47
47_L 59_P 1.025 0.46
88_E 92_W 1.021 0.46
79_T 82_K 1.02 0.46
65_I 182_A 1.017 0.46
50_A 191_I 1.016 0.46
34_W 79_T 1.012 0.45
36_M 164_D 1.012 0.45
92_W 106_F 1.007 0.45
131_M 138_C 1.005 0.44
16_T 70_I 1.004 0.44
131_M 146_M 1 0.44
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2ls2A10.119611.40.968Contact Map0.083
3arcX20.15312.20.977Contact Map0.417
3ffvA20.287120.978Contact Map0.028
2lcoA10.10051.60.979Contact Map0.193
3bz1X10.15791.50.979Contact Map0.408
3w5aC10.14831.30.98Contact Map0.747
2wwbC10.15311.20.98Contact Map0.217
2gfpA20.33491.10.981Contact Map0.165
1v54L20.18661.10.981Contact Map0.205
2a65A10.28711.10.981Contact Map0.371

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0133 seconds.