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OPENSEQ.org
YHDN - Uncharacterized protein YhdN
UniProt: P36677 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11970
Length: 122 (121)
Sequences: 181
Seq/Len: 1.50
YHDN
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
34_D 48_R 3.686 1.00
46_G 49_L 2.037 0.98
56_L 60_L 2.013 0.98
21_F 53_A 1.87 0.97
61_E 64_R 1.856 0.96
22_D 27_S 1.758 0.95
7_W 10_R 1.657 0.92
16_Q 21_F 1.636 0.92
23_N 37_S 1.616 0.91
46_G 50_L 1.613 0.91
66_A 90_L 1.594 0.90
7_W 11_H 1.588 0.90
43_L 47_Y 1.583 0.90
45_A 119_I 1.539 0.88
58_P 100_A 1.527 0.87
93_L 97_L 1.439 0.83
14_E 69_L 1.379 0.79
3_L 48_R 1.359 0.78
82_Q 88_R 1.341 0.76
73_L 114_K 1.337 0.76
13_A 17_A 1.326 0.75
113_D 117_D 1.278 0.71
34_D 37_S 1.268 0.70
92_L 100_A 1.253 0.69
37_S 60_L 1.25 0.69
71_D 74_K 1.247 0.69
16_Q 104_T 1.224 0.67
21_F 27_S 1.208 0.65
22_D 112_A 1.207 0.65
46_G 98_R 1.194 0.64
116_L 119_I 1.194 0.64
29_E 119_I 1.182 0.63
17_A 64_R 1.174 0.62
112_A 116_L 1.171 0.62
46_G 85_E 1.146 0.59
59_E 64_R 1.12 0.56
42_E 64_R 1.12 0.56
50_L 53_A 1.111 0.55
69_L 95_L 1.107 0.55
42_E 53_A 1.103 0.55
82_Q 110_D 1.096 0.54
21_F 76_I 1.096 0.54
39_V 113_D 1.087 0.53
14_E 74_K 1.075 0.52
50_L 57_P 1.074 0.52
45_A 98_R 1.071 0.51
58_P 61_E 1.07 0.51
73_L 79_D 1.069 0.51
20_E 34_D 1.066 0.51
44_R 52_N 1.055 0.50
117_D 121_D 1.041 0.48
47_Y 72_I 1.04 0.48
62_Q 80_D 1.039 0.48
55_C 113_D 1.028 0.47
92_L 96_K 1.017 0.46
4_L 21_F 1.013 0.45
31_L 35_D 1.007 0.45
88_R 116_L 1.005 0.45
49_L 64_R 1 0.44
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1bh9B10.352532.20.93Contact Map0.296
1mhqA20.319718.60.937Contact Map0.329
2rfpA10.467213.90.941Contact Map0.227
3ca8A20.491811.40.943Contact Map0.386
1juqA40.40988.40.946Contact Map0.299
3lqvP20.30337.40.948Contact Map0.095
2fhoA10.36896.80.949Contact Map0.081
3sjaC50.50826.80.949Contact Map0.565
1go4E40.56566.70.949Contact Map0.345
2ke4A10.72956.50.949Contact Map0.216
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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