| UniProt: | P30176 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11579 | ||
| Length: | 160 (145) | ||
| Sequences: | 537 | ||
| Seq/Len: | 3.70 |
| YBIA
Paralog alert: 0.10 [within 20: 0.01] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 98_R | 151_E | 2.626 | 1.00 | |
| 46_T | 49_H | 2.442 | 1.00 | |
| 45_P | 49_H | 2.278 | 1.00 | |
| 44_W | 53_A | 2.258 | 1.00 | |
| 93_K | 142_K | 2.239 | 1.00 | |
| 49_H | 74_A | 2.235 | 1.00 | |
| 101_L | 148_L | 2.15 | 1.00 | |
| 31_N | 101_L | 2.094 | 1.00 | |
| 86_R | 90_E | 2.069 | 1.00 | |
| 90_E | 93_K | 2.044 | 1.00 | |
| 50_Y | 100_A | 1.954 | 1.00 | |
| 120_P | 157_A | 1.892 | 1.00 | |
| 102_R | 155_Q | 1.861 | 1.00 | |
| 53_A | 62_R | 1.85 | 1.00 | |
| 28_D | 114_L | 1.828 | 0.99 | |
| 51_F | 97_M | 1.828 | 0.99 | |
| 119_A | 157_A | 1.814 | 0.99 | |
| 98_R | 155_Q | 1.743 | 0.99 | |
| 109_A | 112_R | 1.714 | 0.99 | |
| 31_N | 47_S | 1.7 | 0.99 | |
| 122_K | 147_Y | 1.662 | 0.99 | |
| 46_T | 74_A | 1.634 | 0.99 | |
| 101_L | 152_L | 1.629 | 0.99 | |
| 48_E | 125_E | 1.59 | 0.98 | |
| 31_N | 97_M | 1.578 | 0.98 | |
| 50_Y | 103_A | 1.571 | 0.98 | |
| 126_H | 135_D | 1.562 | 0.98 | |
| 102_R | 152_L | 1.526 | 0.97 | |
| 48_E | 52_Q | 1.454 | 0.96 | |
| 61_Y | 77_M | 1.392 | 0.95 | |
| 20_Y | 32_F | 1.392 | 0.95 | |
| 40_D | 99_K | 1.37 | 0.94 | |
| 72_M | 76_R | 1.346 | 0.94 | |
| 32_F | 51_F | 1.337 | 0.93 | |
| 94_E | 98_R | 1.333 | 0.93 | |
| 38_K | 41_G | 1.324 | 0.93 | |
| 115_L | 118_T | 1.317 | 0.93 | |
| 39_V | 103_A | 1.293 | 0.92 | |
| 118_T | 123_L | 1.266 | 0.91 | |
| 47_S | 97_M | 1.225 | 0.89 | |
| 71_P | 125_E | 1.219 | 0.89 | |
| 127_T | 135_D | 1.201 | 0.88 | |
| 16_I | 121_A | 1.19 | 0.87 | |
| 115_L | 123_L | 1.149 | 0.84 | |
| 42_K | 63_E | 1.149 | 0.84 | |
| 149_L | 153_R | 1.13 | 0.83 | |
| 34_A | 154_E | 1.13 | 0.83 | |
| 98_R | 148_L | 1.126 | 0.83 | |
| 32_F | 52_Q | 1.092 | 0.80 | |
| 103_A | 106_E | 1.091 | 0.80 | |
| 20_Y | 46_T | 1.087 | 0.79 | |
| 94_E | 132_Y | 1.08 | 0.79 | |
| 31_N | 51_F | 1.076 | 0.78 | |
| 75_A | 125_E | 1.072 | 0.78 | |
| 54_Q | 96_V | 1.06 | 0.77 | |
| 131_A | 140_K | 1.052 | 0.76 | |
| 95_Q | 99_K | 1.036 | 0.75 | |
| 101_L | 107_Q | 1.036 | 0.75 | |
| 70_S | 73_V | 1.031 | 0.74 | |
| 86_R | 92_V | 1.028 | 0.74 | |
| 51_F | 85_L | 1.026 | 0.74 | |
| 45_P | 74_A | 1.023 | 0.73 | |
| 36_P | 43_T | 1.018 | 0.73 | |
| 78_G | 125_E | 1.012 | 0.72 | |
| 63_E | 66_R | 1.009 | 0.72 | |
| 32_F | 79_R | 1.001 | 0.71 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2b3wA | 1 | 1 | 100 | 0.097 | Contact Map | 0.539 |
| 3psiA | 1 | 0.425 | 10.3 | 0.957 | Contact Map | |
| 1w8kA | 1 | 0.9688 | 6.5 | 0.961 | Contact Map | 0.031 |
| 3gwnA | 2 | 0.5 | 5.7 | 0.962 | Contact Map | 0.515 |
| 3u9jA | 2 | 0.5437 | 5 | 0.963 | Contact Map | 0.062 |
| 2k0mA | 1 | 0.5437 | 4.6 | 0.963 | Contact Map | 0.391 |
| 1mhyG | 1 | 0.6813 | 4.3 | 0.964 | Contact Map | 0.197 |
| 2jzyA | 1 | 0.5188 | 4.2 | 0.964 | Contact Map | 0.077 |
| 1mtyG | 2 | 0.6687 | 3.8 | 0.965 | Contact Map | 0.277 |
| 4a69C | 2 | 0.3625 | 3.4 | 0.966 | Contact Map | 0.381 |
Sequence Conservation (Image Generated using WebLogo v3)