OPENSEQ.org - YGBA - ECOLI GREMLIN

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YGBA - Uncharacterized protein YgbA

UniProt:	P25728	Sequence MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKKPHE	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG11287
Length:	117 (113)
Sequences:	235
Seq/Len:	2.08

YGBA
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
31_P	34_Y	2.474	1.00
45_L	51_G	2.468	1.00
37_L	76_I	2.323	1.00
21_Q	31_P	2.172	1.00
6_I	51_G	2.081	0.99
23_K	79_W	1.915	0.99
71_E	74_K	1.909	0.99
13_I	73_M	1.898	0.99
21_Q	34_Y	1.89	0.98
37_L	73_M	1.856	0.98
6_I	45_L	1.855	0.98
10_K	46_D	1.851	0.98
5_R	98_D	1.828	0.98
12_T	94_R	1.676	0.96
51_G	56_A	1.604	0.95
45_L	56_A	1.578	0.94
84_M	92_T	1.549	0.93
17_I	38_F	1.522	0.92
50_F	62_V	1.487	0.91
106_L	109_K	1.471	0.91
71_E	75_Q	1.466	0.90
14_K	38_F	1.307	0.82
8_R	98_D	1.289	0.81
30_E	34_Y	1.289	0.81
61_P	99_D	1.288	0.81
110_Y	113_K	1.259	0.79
21_Q	30_E	1.252	0.78
105_E	108_E	1.241	0.77
16_M	89_P	1.232	0.77
4_K	19_L	1.204	0.74
56_A	99_D	1.184	0.73
69_K	72_E	1.178	0.72
74_K	78_R	1.172	0.71
13_I	37_L	1.168	0.71
9_E	89_P	1.149	0.69
13_I	88_H	1.145	0.69
6_I	56_A	1.143	0.69
12_T	84_M	1.128	0.67
29_A	75_Q	1.113	0.66
7_S	10_K	1.106	0.65
88_H	91_L	1.098	0.64
26_Q	35_E	1.084	0.63
51_G	73_M	1.079	0.62
6_I	55_P	1.067	0.61
13_I	96_L	1.067	0.61
74_K	80_A	1.058	0.60
82_P	89_P	1.052	0.59
72_E	75_Q	1.049	0.59
87_R	101_R	1.011	0.55
9_E	16_M	1.008	0.54
42_Q	69_K	1.007	0.54
11_L	22_A	1.006	0.54
25_P	31_P	1.004	0.54

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
3avrA	1	0.8462	6.6	0.952	Contact Map	0.15
3cngA	4	0.7179	6	0.953	Contact Map	0.386
2jrpA	1	0.6496	3.5	0.958	Contact Map	0.274
1acwA	1	0.2479	3.4	0.958	Contact Map	0
1du9A	1	0.188	2.8	0.96	Contact Map	0.42
2p4eP	2	0.3248	2.3	0.962	Contact Map
3ha4A	8	0.3333	1.7	0.965	Contact Map	0.45
3h63A	2	0.3333	1.5	0.965	Contact Map	0.522
3v5wG	1	0.4701	1.4	0.966	Contact Map	0.306
1tjlA	10	0.5812	1.4	0.966	Contact Map	0.251

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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