OPENSEQ.org - FLIO - ECOLI GREMLIN

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FLIO - Flagellar protein FliO

UniProt:	P22586	Sequence MNNHATVQSSAPVSAAPLLQVSGALIAIIALILAAAWLVKRLGFAPKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEIPQTDFQSVMKNLLKRSGRS	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG11224
Length:	121 (113)
Sequences:	211
Seq/Len:	1.87

FLIO
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
83_T	87_I	3.225	1.00
72_D	75_D	2.076	0.99
107_F	111_M	1.945	0.98
77_R	95_P	1.94	0.98
78_L	117_R	1.885	0.98
70_V	74_E	1.793	0.97
72_D	77_R	1.717	0.96
32_I	36_A	1.684	0.95
79_V	97_A	1.651	0.95
68_V	71_V	1.634	0.94
39_V	83_T	1.632	0.94
82_V	87_I	1.629	0.94
62_L	80_L	1.571	0.93
62_L	68_V	1.53	0.91
41_R	58_A	1.505	0.90
79_V	95_P	1.5	0.90
77_R	93_L	1.454	0.88
69_V	82_V	1.42	0.86
68_V	80_L	1.397	0.85
24_A	28_I	1.382	0.84
84_A	111_M	1.308	0.80
26_I	39_V	1.302	0.79
62_L	87_I	1.264	0.76
77_R	97_A	1.25	0.75
69_V	80_L	1.233	0.74
77_R	96_S	1.208	0.72
24_A	78_L	1.19	0.70
42_L	87_I	1.189	0.70
57_S	70_V	1.185	0.70
38_L	67_R	1.183	0.69
108_Q	112_K	1.159	0.67
68_V	94_P	1.158	0.67
55_K	73_V	1.154	0.67
23_G	109_S	1.147	0.66
9_S	71_V	1.121	0.63
25_L	65_R	1.115	0.63
56_I	99_T	1.103	0.61
71_V	80_L	1.101	0.61
32_I	115_L	1.099	0.61
89_L	92_K	1.089	0.60
76_A	92_K	1.084	0.59
55_K	60_A	1.066	0.57
76_A	93_L	1.059	0.57
56_I	88_N	1.054	0.56
93_L	108_Q	1.052	0.56
9_S	13_V	1.047	0.55
44_F	58_A	1.043	0.55
40_K	86_Q	1.042	0.55
29_I	53_G	1.04	0.55
43_G	78_L	1.036	0.54
62_L	83_T	1.017	0.52
37_W	43_G	1.012	0.52
42_L	83_T	1.012	0.52
24_A	51_V	1.007	0.51
39_V	42_L	1.005	0.51
110_V	116_K	1.002	0.51

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
2l2tA	2	0.3636	19.2	0.924	Contact Map	0.222
2h3gX	1	0.4298	15.2	0.927	Contact Map	0.247
3qhoA	3	0.3554	15	0.928	Contact Map
2nlyA	1	0.4463	11.4	0.931	Contact Map	0.096
2ks1B	1	0.3554	8.3	0.935	Contact Map	0.144
1iijA	1	0.2893	7.6	0.936	Contact Map	0.747
3djcA	12	0.438	6.7	0.938	Contact Map	0.274
2jwaA	2	0.3223	5.6	0.94	Contact Map	0.167
2k1kA	2	0.314	3.2	0.947	Contact Map	0.226
3bexA	6	0.4545	3	0.948	Contact Map	0.266

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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