| UniProt: | P18393 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG14353 | ||
| Length: | 72 (69) | ||
| Sequences: | 508 | ||
| Seq/Len: | 7.36 |
| YBDZ
Paralog alert: 0.12 [within 20: 0.01] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 63_T | 67_Q | 3.944 | 1.00 | |
| 47_A | 51_Q | 3.365 | 1.00 | |
| 22_G | 66_T | 3.197 | 1.00 | |
| 8_D | 14_F | 3.156 | 1.00 | |
| 44_Q | 48_S | 2.504 | 1.00 | |
| 41_C | 44_Q | 2.016 | 1.00 | |
| 21_Q | 64_N | 1.992 | 1.00 | |
| 61_T | 65_F | 1.943 | 1.00 | |
| 63_T | 66_T | 1.939 | 1.00 | |
| 13_A | 43_P | 1.757 | 1.00 | |
| 45_S | 48_S | 1.728 | 1.00 | |
| 20_A | 38_D | 1.669 | 1.00 | |
| 18_R | 38_D | 1.665 | 1.00 | |
| 15_Y | 39_I | 1.566 | 1.00 | |
| 51_Q | 55_A | 1.548 | 1.00 | |
| 17_L | 26_L | 1.51 | 0.99 | |
| 26_L | 46_Q | 1.376 | 0.99 | |
| 60_L | 69_Q | 1.342 | 0.98 | |
| 29_Q | 43_P | 1.296 | 0.98 | |
| 10_P | 47_A | 1.282 | 0.98 | |
| 59_T | 64_N | 1.204 | 0.96 | |
| 61_T | 64_N | 1.202 | 0.96 | |
| 33_L | 39_I | 1.2 | 0.96 | |
| 22_G | 63_T | 1.189 | 0.96 | |
| 52_W | 56_H | 1.171 | 0.95 | |
| 21_Q | 65_F | 1.167 | 0.95 | |
| 7_F | 17_L | 1.129 | 0.94 | |
| 16_I | 53_L | 1.096 | 0.93 | |
| 65_F | 69_Q | 1.087 | 0.92 | |
| 16_I | 24_F | 1.085 | 0.92 | |
| 40_V | 52_W | 1.063 | 0.91 | |
| 16_I | 52_W | 1.061 | 0.91 | |
| 42_Q | 52_W | 1.038 | 0.90 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2khrA | 1 | 1 | 100 | 0.021 | Contact Map | 0.243 |
| 2pstX | 1 | 1 | 100 | 0.023 | Contact Map | 0.644 |
| 2lpdA | 1 | 1 | 100 | 0.025 | Contact Map | 0.489 |
| 4gr5A | 4 | 1 | 99.3 | 0.594 | Contact Map | 0.549 |
| 1jmqA | 1 | 0.6111 | 20 | 0.911 | Contact Map | 0.086 |
| 1eg3A | 1 | 0.7083 | 19.2 | 0.912 | Contact Map | 0.243 |
| 3olmA | 1 | 0.6667 | 11.8 | 0.92 | Contact Map | 0.093 |
| 1wr4A | 1 | 0.4722 | 9.5 | 0.923 | Contact Map | 0.147 |
| 2jv4A | 1 | 0.6528 | 8.5 | 0.925 | Contact Map | 0.202 |
| 2yseA | 1 | 0.7361 | 7.7 | 0.926 | Contact Map | 0.283 |
Sequence Conservation (Image Generated using WebLogo v3)