| UniProt: | P0CF86 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13207 | ||
| Length: | 51 (50) | ||
| Sequences: | 913 | ||
| Seq/Len: | 18.26 |
| YFJU
Paralog alert: 0.38 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 33_N | 36_D | 4.501 | 1.00 | |
| 46_K | 50_D | 3.583 | 1.00 | |
| 40_T | 43_E | 3.021 | 1.00 | |
| 23_H | 28_E | 2.208 | 1.00 | |
| 8_H | 15_S | 2.203 | 1.00 | |
| 14_T | 17_N | 2.183 | 1.00 | |
| 7_Y | 47_L | 1.953 | 1.00 | |
| 5_T | 30_T | 1.851 | 1.00 | |
| 41_R | 45_I | 1.688 | 1.00 | |
| 20_E | 24_N | 1.671 | 1.00 | |
| 6_I | 18_T | 1.549 | 1.00 | |
| 43_E | 46_K | 1.422 | 1.00 | |
| 22_L | 25_N | 1.263 | 0.99 | |
| 17_N | 20_E | 1.214 | 0.98 | |
| 21_M | 25_N | 1.194 | 0.98 | |
| 4_I | 27_N | 1.164 | 0.97 | |
| 14_T | 51_I | 1.146 | 0.97 | |
| 19_L | 29_P | 1.096 | 0.96 | |
| 23_H | 29_P | 1.069 | 0.95 | |
| 9_N | 15_S | 1.056 | 0.95 | |
| 32_I | 37_M | 1.02 | 0.93 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1wpiA | 1 | 0.9804 | 99.4 | 0.305 | Contact Map | 0.264 |
| 2kokA | 1 | 1 | 99.2 | 0.381 | Contact Map | 0.656 |
| 1s3cA | 1 | 1 | 99.2 | 0.386 | Contact Map | 0.87 |
| 3f0iA | 2 | 1 | 99.2 | 0.39 | Contact Map | 0.925 |
| 3gkxA | 2 | 1 | 99.2 | 0.395 | Contact Map | 0.745 |
| 3fz4A | 1 | 0.9804 | 99.2 | 0.395 | Contact Map | 0.801 |
| 3rdwA | 2 | 1 | 99.2 | 0.396 | Contact Map | 0.913 |
| 1z3eA | 1 | 0.9804 | 99.1 | 0.413 | Contact Map | 0.811 |
| 2m46A | 1 | 1 | 99.1 | 0.419 | Contact Map | 0.8 |
| 1rw1A | 1 | 0.9608 | 99 | 0.435 | Contact Map | 0.766 |
Sequence Conservation (Image Generated using WebLogo v3)