| UniProt: | P0AGD1 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13419 | ||
| Length: | 173 (156) | ||
| Sequences: | 868 | ||
| Seq/Len: | 5.56 |
| SODC
Paralog alert: 0.18 [within 20: 0.02] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 101_H | 104_P | 2.961 | 1.00 | |
| 60_P | 167_Y | 2.745 | 1.00 | |
| 119_N | 123_K | 2.379 | 1.00 | |
| 54_P | 126_D | 2.356 | 1.00 | |
| 55_D | 125_T | 2.283 | 1.00 | |
| 64_H | 118_V | 2.052 | 1.00 | |
| 50_L | 134_K | 1.927 | 1.00 | |
| 43_I | 144_L | 1.923 | 1.00 | |
| 43_I | 139_I | 1.902 | 1.00 | |
| 139_I | 142_K | 1.892 | 1.00 | |
| 148_V | 165_E | 1.805 | 1.00 | |
| 70_A | 97_N | 1.746 | 1.00 | |
| 54_P | 127_A | 1.722 | 1.00 | |
| 155_D | 158_K | 1.698 | 1.00 | |
| 14_A | 20_A | 1.61 | 0.99 | |
| 49_G | 129_I | 1.58 | 0.99 | |
| 41_V | 54_P | 1.579 | 0.99 | |
| 72_G | 171_V | 1.522 | 0.99 | |
| 68_I | 172_I | 1.503 | 0.99 | |
| 51_E | 129_I | 1.49 | 0.99 | |
| 67_H | 92_H | 1.477 | 0.99 | |
| 41_V | 144_L | 1.468 | 0.99 | |
| 66_F | 124_A | 1.453 | 0.98 | |
| 95_P | 109_H | 1.453 | 0.98 | |
| 56_L | 65_G | 1.451 | 0.98 | |
| 51_E | 127_A | 1.429 | 0.98 | |
| 43_I | 172_I | 1.412 | 0.98 | |
| 65_G | 116_L | 1.408 | 0.98 | |
| 63_E | 117_V | 1.408 | 0.98 | |
| 78_T | 83_A | 1.385 | 0.98 | |
| 43_I | 52_F | 1.377 | 0.98 | |
| 89_A | 143_A | 1.373 | 0.98 | |
| 93_L | 110_L | 1.366 | 0.97 | |
| 113_L | 130_A | 1.333 | 0.97 | |
| 116_L | 124_A | 1.331 | 0.97 | |
| 161_G | 164_G | 1.329 | 0.97 | |
| 136_L | 139_I | 1.311 | 0.97 | |
| 98_T | 107_A | 1.288 | 0.96 | |
| 68_I | 144_L | 1.277 | 0.96 | |
| 65_G | 163_G | 1.274 | 0.96 | |
| 100_K | 104_P | 1.253 | 0.95 | |
| 46_T | 51_E | 1.25 | 0.95 | |
| 115_A | 153_M | 1.249 | 0.95 | |
| 160_L | 163_G | 1.248 | 0.95 | |
| 14_A | 21_S | 1.225 | 0.94 | |
| 74_C | 143_A | 1.219 | 0.94 | |
| 151_D | 161_G | 1.201 | 0.94 | |
| 118_V | 123_K | 1.197 | 0.93 | |
| 45_E | 135_S | 1.184 | 0.93 | |
| 50_L | 133_L | 1.183 | 0.93 | |
| 115_A | 152_N | 1.174 | 0.93 | |
| 93_L | 142_K | 1.164 | 0.92 | |
| 74_C | 169_C | 1.158 | 0.92 | |
| 156_Q | 159_P | 1.158 | 0.92 | |
| 62_G | 118_V | 1.153 | 0.92 | |
| 15_T | 21_S | 1.136 | 0.91 | |
| 48_K | 156_Q | 1.125 | 0.90 | |
| 74_C | 159_P | 1.109 | 0.89 | |
| 99_G | 107_A | 1.105 | 0.89 | |
| 29_V | 86_A | 1.1 | 0.89 | |
| 15_T | 22_E | 1.096 | 0.89 | |
| 56_L | 116_L | 1.07 | 0.87 | |
| 77_A | 83_A | 1.066 | 0.87 | |
| 86_A | 142_K | 1.063 | 0.87 | |
| 62_G | 156_Q | 1.034 | 0.84 | |
| 45_E | 50_L | 1.022 | 0.84 | |
| 94_D | 98_T | 1.012 | 0.83 | |
| 14_A | 22_E | 1.006 | 0.82 | |
| 38_I | 168_A | 1 | 0.82 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1z9nA | 4 | 0.9827 | 100 | 0.17 | Contact Map | 0.682 |
| 1esoA | 1 | 0.8844 | 100 | 0.195 | Contact Map | 0.64 |
| 1eqwA | 4 | 0.8844 | 100 | 0.198 | Contact Map | 0.65 |
| 2aqmA | 1 | 0.8844 | 100 | 0.201 | Contact Map | 0.627 |
| 1oalA | 1 | 0.8671 | 100 | 0.206 | Contact Map | 0.667 |
| 2aqpA | 2 | 0.9364 | 100 | 0.213 | Contact Map | 0.691 |
| 1pzsA | 1 | 0.948 | 100 | 0.246 | Contact Map | 0.604 |
| 3pu7A | 2 | 0.8092 | 100 | 0.25 | Contact Map | 0.676 |
| 1to4A | 4 | 0.815 | 100 | 0.253 | Contact Map | 0.64 |
| 2q2lA | 2 | 0.8035 | 100 | 0.253 | Contact Map | 0.67 |
Sequence Conservation (Image Generated using WebLogo v3)