| UniProt: | P0AFP6 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13305 | ||
| Length: | 247 (246) | ||
| Sequences: | 1727 | ||
| Seq/Len: | 7.02 |
| YBGI
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 213_A | 218_T | 3.876 | 1.00 | |
| 50_D | 85_T | 3.297 | 1.00 | |
| 169_A | 187_V | 2.983 | 1.00 | |
| 132_E | 166_Q | 2.657 | 1.00 | |
| 37_K | 237_D | 2.571 | 1.00 | |
| 142_L | 189_A | 2.451 | 1.00 | |
| 41_G | 62_V | 2.45 | 1.00 | |
| 192_T | 210_F | 2.308 | 1.00 | |
| 145_W | 149_R | 2.245 | 1.00 | |
| 137_V | 145_W | 2.211 | 1.00 | |
| 19_I | 25_N | 2.184 | 1.00 | |
| 165_V | 189_A | 2.145 | 1.00 | |
| 119_T | 134_T | 2.128 | 1.00 | |
| 86_L | 93_L | 2.123 | 1.00 | |
| 132_E | 167_R | 2.107 | 1.00 | |
| 194_E | 212_A | 1.996 | 1.00 | |
| 6_L | 59_A | 1.977 | 1.00 | |
| 37_K | 58_D | 1.963 | 1.00 | |
| 112_L | 150_L | 1.936 | 1.00 | |
| 138_P | 141_E | 1.933 | 1.00 | |
| 146_I | 191_I | 1.883 | 1.00 | |
| 39_V | 57_A | 1.875 | 1.00 | |
| 36_Q | 58_D | 1.857 | 1.00 | |
| 46_Q | 81_N | 1.853 | 1.00 | |
| 55_L | 239_T | 1.829 | 1.00 | |
| 9_L | 229_W | 1.829 | 1.00 | |
| 227_S | 231_N | 1.818 | 1.00 | |
| 110_A | 129_P | 1.813 | 1.00 | |
| 40_T | 227_S | 1.801 | 1.00 | |
| 49_L | 60_V | 1.785 | 1.00 | |
| 62_V | 95_G | 1.771 | 1.00 | |
| 19_I | 102_A | 1.761 | 1.00 | |
| 49_L | 86_L | 1.758 | 1.00 | |
| 139_G | 156_W | 1.716 | 1.00 | |
| 46_Q | 85_T | 1.705 | 1.00 | |
| 53_V | 85_T | 1.699 | 1.00 | |
| 136_P | 164_V | 1.694 | 1.00 | |
| 37_K | 239_T | 1.687 | 1.00 | |
| 51_E | 55_L | 1.628 | 1.00 | |
| 41_G | 60_V | 1.601 | 1.00 | |
| 139_G | 211_Y | 1.6 | 1.00 | |
| 53_V | 89_N | 1.565 | 1.00 | |
| 193_G | 214_G | 1.559 | 1.00 | |
| 177_S | 198_Q | 1.555 | 1.00 | |
| 50_D | 54_R | 1.554 | 1.00 | |
| 44_A | 62_V | 1.549 | 1.00 | |
| 49_L | 85_T | 1.545 | 0.99 | |
| 86_L | 91_I | 1.543 | 0.99 | |
| 11_N | 16_S | 1.535 | 0.99 | |
| 109_N | 172_T | 1.53 | 0.99 | |
| 67_F | 71_E | 1.528 | 0.99 | |
| 13_K | 229_W | 1.528 | 0.99 | |
| 120_V | 132_E | 1.496 | 0.99 | |
| 3_N | 92_N | 1.494 | 0.99 | |
| 189_A | 211_Y | 1.478 | 0.99 | |
| 192_T | 195_V | 1.478 | 0.99 | |
| 108_N | 172_T | 1.471 | 0.99 | |
| 142_L | 168_V | 1.469 | 0.99 | |
| 171_C | 178_F | 1.459 | 0.99 | |
| 3_N | 35_V | 1.425 | 0.99 | |
| 105_E | 110_A | 1.424 | 0.99 | |
| 46_Q | 50_D | 1.416 | 0.99 | |
| 6_L | 35_V | 1.414 | 0.99 | |
| 139_G | 209_H | 1.412 | 0.99 | |
| 15_N | 18_A | 1.41 | 0.99 | |
| 7_E | 11_N | 1.388 | 0.99 | |
| 37_K | 56_G | 1.372 | 0.99 | |
| 9_L | 234_T | 1.367 | 0.98 | |
| 182_A | 187_V | 1.363 | 0.98 | |
| 11_N | 94_Y | 1.344 | 0.98 | |
| 14_L | 100_L | 1.322 | 0.98 | |
| 142_L | 191_I | 1.318 | 0.98 | |
| 136_P | 166_Q | 1.316 | 0.98 | |
| 2_K | 34_T | 1.308 | 0.98 | |
| 142_L | 146_I | 1.282 | 0.97 | |
| 40_T | 238_V | 1.278 | 0.97 | |
| 41_G | 48_L | 1.272 | 0.97 | |
| 80_R | 83_L | 1.267 | 0.97 | |
| 7_E | 94_Y | 1.239 | 0.97 | |
| 115_L | 224_R | 1.235 | 0.97 | |
| 195_V | 210_F | 1.224 | 0.96 | |
| 13_K | 106_L | 1.224 | 0.96 | |
| 228_E | 232_E | 1.22 | 0.96 | |
| 45_S | 201_H | 1.218 | 0.96 | |
| 33_E | 90_D | 1.205 | 0.96 | |
| 166_Q | 188_D | 1.196 | 0.96 | |
| 51_E | 241_I | 1.195 | 0.96 | |
| 116_L | 146_I | 1.193 | 0.96 | |
| 39_V | 55_L | 1.193 | 0.96 | |
| 140_L | 144_S | 1.192 | 0.96 | |
| 39_V | 60_V | 1.185 | 0.95 | |
| 40_T | 61_I | 1.182 | 0.95 | |
| 135_M | 141_E | 1.179 | 0.95 | |
| 80_R | 87_L | 1.178 | 0.95 | |
| 59_A | 92_N | 1.173 | 0.95 | |
| 3_N | 59_A | 1.16 | 0.95 | |
| 183_A | 206_Q | 1.155 | 0.94 | |
| 37_K | 55_L | 1.155 | 0.94 | |
| 131_G | 182_A | 1.152 | 0.94 | |
| 5_E | 8_Q | 1.15 | 0.94 | |
| 124_I | 128_V | 1.143 | 0.94 | |
| 171_C | 190_F | 1.142 | 0.94 | |
| 44_A | 60_V | 1.142 | 0.94 | |
| 111_Q | 114_A | 1.138 | 0.94 | |
| 84_K | 88_A | 1.137 | 0.94 | |
| 180_D | 184_R | 1.127 | 0.94 | |
| 191_I | 211_Y | 1.127 | 0.94 | |
| 114_A | 121_M | 1.12 | 0.93 | |
| 139_G | 189_A | 1.118 | 0.93 | |
| 133_L | 136_P | 1.112 | 0.93 | |
| 51_E | 54_R | 1.106 | 0.93 | |
| 150_L | 218_T | 1.091 | 0.92 | |
| 24_P | 28_Q | 1.081 | 0.92 | |
| 130_W | 187_V | 1.08 | 0.91 | |
| 39_V | 51_E | 1.067 | 0.91 | |
| 189_A | 209_H | 1.065 | 0.91 | |
| 27_L | 92_N | 1.059 | 0.90 | |
| 195_V | 200_I | 1.048 | 0.90 | |
| 200_I | 247_A | 1.044 | 0.90 | |
| 118_I | 131_G | 1.036 | 0.89 | |
| 84_K | 87_L | 1.034 | 0.89 | |
| 180_D | 202_S | 1.034 | 0.89 | |
| 196_S | 199_T | 1.03 | 0.89 | |
| 176_Q | 196_S | 1.023 | 0.88 | |
| 111_Q | 225_A | 1.019 | 0.88 | |
| 43_T | 197_E | 1.017 | 0.88 | |
| 167_R | 187_V | 1.008 | 0.87 | |
| 29_V | 86_L | 1.004 | 0.87 | |
| 100_L | 222_G | 1.004 | 0.87 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1nmoA | 6 | 0.996 | 100 | 0.035 | Contact Map | 0.818 |
| 2gx8A | 3 | 0.9879 | 100 | 0.046 | Contact Map | 0.787 |
| 2nydA | 2 | 0.9879 | 100 | 0.047 | Contact Map | 0.817 |
| 2yybA | 2 | 0.9757 | 100 | 0.065 | Contact Map | 0.786 |
| 2fywA | 3 | 0.9838 | 100 | 0.067 | Contact Map | 0.752 |
| 3rxyA | 6 | 0.9231 | 100 | 0.207 | Contact Map | 0.525 |
| 3tr9A | 4 | 0.8421 | 73.9 | 0.938 | Contact Map | 0.449 |
| 1tx2A | 2 | 0.8016 | 73.7 | 0.938 | Contact Map | 0.382 |
| 2bmbA | 1 | 0.7854 | 53.1 | 0.945 | Contact Map | 0.298 |
| 2dqwA | 2 | 0.8097 | 51.6 | 0.946 | Contact Map | 0.41 |
Sequence Conservation (Image Generated using WebLogo v3)