| UniProt: | P0AF48 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11935 | ||
| Length: | 138 (137) | ||
| Sequences: | 1393 | ||
| Seq/Len: | 10.17 |
| YJBQ
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 5_K | 29_D | 3.495 | 1.00 | |
| 23_I | 117_I | 2.971 | 1.00 | |
| 38_L | 133_A | 2.782 | 1.00 | |
| 26_Q | 133_A | 2.53 | 1.00 | |
| 61_H | 78_E | 2.229 | 1.00 | |
| 65_R | 78_E | 2.207 | 1.00 | |
| 48_S | 122_H | 2.104 | 1.00 | |
| 42_L | 47_A | 2.071 | 1.00 | |
| 34_N | 106_K | 2.057 | 1.00 | |
| 22_E | 25_N | 2.031 | 1.00 | |
| 105_H | 110_Q | 1.994 | 1.00 | |
| 50_T | 94_S | 1.977 | 1.00 | |
| 40_L | 133_A | 1.95 | 1.00 | |
| 7_L | 133_A | 1.918 | 1.00 | |
| 43_Q | 130_R | 1.863 | 1.00 | |
| 24_L | 108_R | 1.859 | 1.00 | |
| 6_T | 130_R | 1.846 | 1.00 | |
| 12_K | 15_G | 1.812 | 1.00 | |
| 33_V | 135_L | 1.753 | 1.00 | |
| 37_L | 101_V | 1.643 | 1.00 | |
| 48_S | 96_L | 1.635 | 1.00 | |
| 8_T | 128_S | 1.529 | 1.00 | |
| 39_H | 101_V | 1.512 | 1.00 | |
| 54_N | 116_G | 1.5 | 1.00 | |
| 66_F | 91_I | 1.495 | 1.00 | |
| 35_I | 105_H | 1.491 | 1.00 | |
| 23_I | 38_L | 1.472 | 1.00 | |
| 58_T | 81_Y | 1.414 | 1.00 | |
| 58_T | 78_E | 1.406 | 0.99 | |
| 16_F | 120_G | 1.406 | 0.99 | |
| 67_F | 96_L | 1.364 | 0.99 | |
| 102_L | 117_I | 1.36 | 0.99 | |
| 51_L | 102_L | 1.347 | 0.99 | |
| 30_M | 135_L | 1.302 | 0.99 | |
| 18_L | 116_G | 1.302 | 0.99 | |
| 10_S | 22_E | 1.291 | 0.99 | |
| 65_R | 69_R | 1.282 | 0.99 | |
| 73_D | 86_D | 1.273 | 0.99 | |
| 8_T | 130_R | 1.265 | 0.99 | |
| 104_V | 135_L | 1.252 | 0.99 | |
| 28_A | 108_R | 1.218 | 0.98 | |
| 77_Y | 80_D | 1.218 | 0.98 | |
| 66_F | 70_T | 1.206 | 0.98 | |
| 63_M | 94_S | 1.202 | 0.98 | |
| 73_D | 77_Y | 1.17 | 0.97 | |
| 124_I | 127_G | 1.162 | 0.97 | |
| 41_L | 51_L | 1.147 | 0.97 | |
| 64_E | 68_L | 1.141 | 0.97 | |
| 66_F | 77_Y | 1.14 | 0.97 | |
| 50_T | 120_G | 1.118 | 0.96 | |
| 71_V | 77_Y | 1.114 | 0.96 | |
| 71_V | 95_M | 1.106 | 0.96 | |
| 39_H | 134_T | 1.092 | 0.96 | |
| 96_L | 122_H | 1.077 | 0.95 | |
| 10_S | 128_S | 1.076 | 0.95 | |
| 5_K | 26_Q | 1.073 | 0.95 | |
| 93_S | 98_T | 1.057 | 0.95 | |
| 74_N | 84_A | 1.056 | 0.95 | |
| 38_L | 104_V | 1.053 | 0.95 | |
| 58_T | 61_H | 1.044 | 0.94 | |
| 25_N | 29_D | 1.043 | 0.94 | |
| 59_V | 82_E | 1.035 | 0.94 | |
| 61_H | 65_R | 1.035 | 0.94 | |
| 4_Q | 110_Q | 1.011 | 0.93 | |
| 33_V | 104_V | 1.005 | 0.93 | |
| 49_L | 100_L | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2p6cA | 2 | 0.9783 | 100 | 0.051 | Contact Map | 0.71 |
| 1vmjA | 1 | 0.9783 | 100 | 0.057 | Contact Map | 0.696 |
| 1vphA | 6 | 0.971 | 100 | 0.065 | Contact Map | 0.754 |
| 2p6hA | 2 | 0.9638 | 100 | 0.069 | Contact Map | 0.655 |
| 1ve0A | 1 | 0.9565 | 100 | 0.074 | Contact Map | 0.652 |
| 1vmfA | 3 | 0.9638 | 100 | 0.087 | Contact Map | 0.821 |
| 1vmhA | 1 | 0.9493 | 100 | 0.093 | Contact Map | 0.632 |
| 2cu5A | 3 | 0.9275 | 100 | 0.119 | Contact Map | 0.744 |
| 1mzrA | 2 | 0.3768 | 4.9 | 0.955 | Contact Map | 0.452 |
| 4gieA | 1 | 0.3623 | 4.7 | 0.955 | Contact Map | 0 |
Sequence Conservation (Image Generated using WebLogo v3)