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OPENSEQ.org
YQAE - UPF0057 membrane protein YqaE
UniProt: P0AE42 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14313
Length: 52 (52)
Sequences: 482
Seq/Len: 9.27
YQAE
Paralog alert: 0.12 [within 20: 0.02] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
30_N 44_H 4.056 1.00
5_R 20_G 2.164 1.00
38_Y 42_L 2.034 1.00
9_T 42_L 1.973 1.00
17_V 48_V 1.762 1.00
6_I 46_F 1.75 1.00
10_I 45_A 1.579 1.00
25_W 29_I 1.546 1.00
26_A 29_I 1.452 1.00
12_L 18_L 1.362 0.99
12_L 15_L 1.334 0.99
36_L 40_P 1.318 0.99
9_T 46_F 1.306 0.99
23_F 27_F 1.298 0.99
24_G 28_I 1.248 0.98
16_G 34_T 1.245 0.98
9_T 49_Q 1.24 0.98
26_A 44_H 1.184 0.97
2_G 49_Q 1.183 0.97
12_L 19_L 1.154 0.97
46_F 50_T 1.151 0.97
3_F 6_I 1.105 0.96
20_G 48_V 1.058 0.94
21_K 48_V 1.054 0.94
6_I 10_I 1.053 0.94
12_L 34_T 1.027 0.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
4i0uA100.903880.881Contact Map0.339
4ev6A50.90385.60.889Contact Map0.356
1mhsA211.40.919Contact Map0.189
4aq5C10.90381.30.92Contact Map0.161
4hg6A10.69231.10.924Contact Map0.27
4aq5E10.92310.90.928Contact Map0.206
4aq5A20.90380.90.929Contact Map0.122
1fftA210.80.929Contact Map0.348
1fftB20.98080.80.931Contact Map0.283
2bg9C10.90380.80.931Contact Map0.188
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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