OPENSEQ.org - YIDH - ECOLI GREMLIN

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YIDH - Inner membrane protein YidH

UniProt:	P0ADM0	Sequence MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAPDFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMVVAVIVMGLVLYAG	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG11696
Length:	115 (108)
Sequences:	301
Seq/Len:	2.79

YIDH
Paralog alert: 0.06 [within 20: 0.01] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
7_G	78_E	1.915	0.99
11_D	14_F	1.836	0.99
18_N	22_F	1.715	0.98
33_L	63_S	1.67	0.98
10_P	82_R	1.626	0.97
39_L	62_F	1.563	0.96
36_G	60_C	1.493	0.95
33_L	107_V	1.489	0.95
12_Y	81_M	1.462	0.94
34_A	63_S	1.442	0.93
9_A	86_D	1.432	0.93
12_Y	41_Q	1.426	0.93
63_S	103_V	1.401	0.92
18_N	78_E	1.377	0.91
12_Y	40_D	1.365	0.91
32_F	62_F	1.349	0.90
76_R	102_V	1.314	0.89
35_A	74_W	1.311	0.88
11_D	15_S	1.298	0.88
29_A	72_L	1.29	0.87
36_G	67_A	1.279	0.87
56_A	60_C	1.26	0.86
14_F	35_A	1.242	0.84
36_G	63_S	1.224	0.83
35_A	100_L	1.216	0.83
37_V	42_L	1.21	0.82
45_D	73_R	1.164	0.79
14_F	74_W	1.153	0.78
22_F	52_R	1.15	0.78
81_M	90_T	1.144	0.77
64_G	108_M	1.14	0.77
55_L	103_V	1.134	0.76
63_S	81_M	1.133	0.76
42_L	107_V	1.132	0.76
52_R	59_L	1.131	0.76
15_S	74_W	1.12	0.75
62_F	95_I	1.112	0.74
65_G	83_L	1.096	0.73
29_A	36_G	1.087	0.72
74_W	82_R	1.086	0.72
32_F	96_I	1.085	0.72
104_A	108_M	1.081	0.71
57_L	106_I	1.073	0.70
34_A	37_V	1.069	0.70
70_G	111_V	1.066	0.70
14_F	87_L	1.065	0.70
105_V	111_V	1.062	0.69
28_T	38_G	1.062	0.69
10_P	78_E	1.049	0.68
31_G	76_R	1.048	0.68
48_T	93_L	1.046	0.68
47_A	110_L	1.046	0.68
7_G	10_P	1.043	0.67
41_Q	44_P	1.043	0.67
12_Y	93_L	1.033	0.66
96_I	99_I	1.02	0.65
100_L	112_L	1.019	0.65
11_D	82_R	1.014	0.64
100_L	105_V	1.008	0.63
68_M	106_I	1.001	0.63

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
2f93B	1	0.7043	10.8	0.929	Contact Map	0
2f95B	1	0.687	4.7	0.94	Contact Map	0.005
2kncA	1	0.313	4.2	0.942	Contact Map	0.323
2kncB	1	0.2957	3.8	0.943	Contact Map	0.177
2l8sA	1	0.287	3.2	0.945	Contact Map	0.179
2zuxA	2	0.3391	3.1	0.945	Contact Map	0
4av3A	2	0.6261	3.1	0.945	Contact Map	0.103
1kf6C	2	0.9652	2.5	0.948	Contact Map	0.08
3m0mA	4	0.3391	2.4	0.948	Contact Map	0
3aqpA	2	0.8	2.2	0.949	Contact Map	0.11

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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