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OPENSEQ.org
YJJP - Inner membrane protein YjjP
UniProt: P0ADD5 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12592
Length: 256 (248)
Sequences: 1077
Seq/Len: 4.34
YJJP
Paralog alert: 0.22 [within 20: 0.01] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
91_L 105_R 3.909 1.00
124_G 149_T 3.517 1.00
105_R 108_Q 3.136 1.00
41_L 92_A 2.337 1.00
8_A 100_K 2.265 1.00
127_C 148_S 2.202 1.00
128_A 145_F 2.177 1.00
226_L 230_A 2.08 1.00
17_G 55_I 2.057 1.00
98_D 101_G 1.987 1.00
137_G 140_G 1.912 1.00
17_G 34_S 1.905 1.00
20_L 25_A 1.879 1.00
33_L 89_V 1.857 1.00
8_A 103_E 1.857 1.00
16_C 106_F 1.854 1.00
88_I 109_I 1.851 1.00
115_P 118_L 1.808 1.00
86_Q 90_I 1.803 1.00
147_A 179_I 1.764 1.00
92_A 102_V 1.746 0.99
131_C 136_G 1.716 0.99
130_F 202_L 1.668 0.99
16_C 33_L 1.661 0.99
124_G 145_F 1.618 0.99
16_C 85_V 1.576 0.99
86_Q 89_V 1.539 0.98
150_T 175_A 1.532 0.98
13_C 37_L 1.504 0.98
169_F 235_L 1.497 0.98
85_V 106_F 1.487 0.98
217_M 225_G 1.478 0.98
75_R 220_G 1.473 0.98
34_S 48_S 1.461 0.97
151_A 203_L 1.454 0.97
181_G 246_A 1.451 0.97
56_V 69_T 1.447 0.97
216_D 220_G 1.428 0.97
75_R 231_I 1.418 0.97
239_T 246_A 1.413 0.97
26_E 31_D 1.362 0.96
88_I 102_V 1.348 0.95
140_G 192_T 1.343 0.95
101_G 104_K 1.332 0.95
87_H 91_L 1.324 0.95
101_G 105_R 1.323 0.95
95_H 102_V 1.299 0.94
29_L 140_G 1.273 0.93
114_Y 118_L 1.248 0.92
121_L 145_F 1.236 0.92
166_Q 216_D 1.22 0.91
16_C 89_V 1.218 0.91
202_L 205_V 1.215 0.91
179_I 183_L 1.213 0.91
148_S 152_M 1.208 0.91
176_A 203_L 1.206 0.90
131_C 199_A 1.196 0.90
18_L 70_R 1.196 0.90
34_S 57_L 1.195 0.90
16_C 37_L 1.195 0.90
13_C 38_G 1.192 0.90
91_L 96_L 1.186 0.89
120_A 149_T 1.181 0.89
198_A 221_H 1.178 0.89
18_L 22_Q 1.175 0.89
121_L 154_I 1.175 0.89
135_N 141_A 1.167 0.88
200_S 248_T 1.164 0.88
123_V 152_M 1.164 0.88
67_T 133_L 1.16 0.88
32_E 36_R 1.149 0.87
9_V 43_M 1.146 0.87
33_L 86_Q 1.14 0.87
25_A 86_Q 1.138 0.87
66_L 70_R 1.135 0.87
88_I 174_F 1.131 0.86
33_L 36_R 1.125 0.86
98_D 104_K 1.122 0.86
15_Q 103_E 1.122 0.86
12_L 16_C 1.119 0.85
29_L 89_V 1.117 0.85
46_V 57_L 1.105 0.85
128_A 141_A 1.104 0.84
169_F 240_C 1.1 0.84
19_F 85_V 1.1 0.84
33_L 90_I 1.09 0.83
37_L 89_V 1.088 0.83
143_I 183_L 1.084 0.83
151_A 176_A 1.082 0.83
49_S 54_A 1.081 0.83
26_E 215_A 1.076 0.82
14_I 83_T 1.074 0.82
104_K 108_Q 1.074 0.82
37_L 92_A 1.072 0.82
31_D 71_K 1.071 0.82
17_G 32_E 1.07 0.82
213_A 229_W 1.065 0.81
72_N 193_P 1.062 0.81
53_N 227_A 1.06 0.81
62_D 138_W 1.057 0.81
13_C 232_A 1.054 0.80
147_A 196_A 1.051 0.80
26_E 86_Q 1.05 0.80
117_W 120_A 1.049 0.80
157_L 160_Q 1.043 0.80
153_Y 157_L 1.04 0.79
80_H 84_E 1.033 0.79
27_S 84_E 1.029 0.78
15_Q 85_V 1.029 0.78
97_L 101_G 1.026 0.78
19_F 110_Q 1.022 0.78
91_L 97_L 1.021 0.77
246_A 250_W 1.017 0.77
21_L 30_V 1.011 0.76
43_M 59_T 1.011 0.76
192_T 205_V 1.008 0.76
36_R 89_V 1.007 0.76
182_L 186_L 1.005 0.76
116_R 156_Q 1 0.75
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3rfuA40.62527.20.952Contact Map0.168
1y9iA40.54321.60.954Contact Map0.489
2nwlA30.589817.40.956Contact Map0.138
1wozA10.433615.90.957Contact Map0.105
2zy9A20.742213.10.958Contact Map0.244
1rfzA40.531212.70.958Contact Map0.529
1zk8A20.6797110.96Contact Map0.356
2dt7A10.140610.40.96Contact Map0.436
3bo0B10.259.90.96Contact Map0.355
1nogA10.43369.40.961Contact Map0.164
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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