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OPENSEQ.org

YJJB - UPF0442 protein YjjB
UniProt: P0ADD2 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11215
Length: 157 (151)
Sequences: 560
Seq/Len: 3.71

YJJB
Paralog alert: 0.17 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
105_A 129_F 2.91 1.00
13_D 46_H 2.518 1.00
48_S 69_L 2.386 1.00
14_M 43_S 2.323 1.00
18_A 39_A 2.083 1.00
71_G 146_P 1.73 0.99
93_V 139_L 1.658 0.99
105_A 132_A 1.62 0.98
52_L 65_M 1.611 0.98
92_A 139_L 1.578 0.98
31_P 73_I 1.526 0.98
67_S 142_G 1.524 0.97
28_F 94_I 1.519 0.97
14_M 47_G 1.458 0.96
18_A 36_R 1.421 0.96
26_M 154_R 1.415 0.96
68_M 146_P 1.396 0.95
17_A 66_A 1.376 0.95
45_G 70_V 1.354 0.94
6_F 51_I 1.344 0.94
34_A 83_A 1.322 0.93
36_R 40_L 1.319 0.93
41_L 77_W 1.312 0.93
63_T 135_I 1.279 0.91
75_I 147_G 1.263 0.91
41_L 92_A 1.252 0.90
21_A 42_G 1.236 0.89
58_N 61_W 1.235 0.89
30_V 38_C 1.226 0.89
6_F 115_L 1.216 0.88
45_G 92_A 1.211 0.88
31_P 34_A 1.184 0.87
22_V 39_A 1.177 0.86
29_N 67_S 1.176 0.86
94_I 143_L 1.176 0.86
13_D 16_L 1.176 0.86
30_V 34_A 1.173 0.86
21_A 39_A 1.172 0.86
83_A 88_F 1.164 0.85
25_A 30_V 1.161 0.85
100_I 104_T 1.157 0.85
114_Q 119_E 1.139 0.84
44_I 48_S 1.134 0.83
4_I 153_K 1.124 0.82
79_R 137_G 1.119 0.82
45_G 145_I 1.109 0.81
22_V 36_R 1.109 0.81
5_E 115_L 1.108 0.81
17_A 47_G 1.105 0.81
30_V 93_V 1.104 0.81
5_E 9_A 1.103 0.81
92_A 97_F 1.101 0.81
94_I 106_M 1.097 0.80
60_E 138_A 1.093 0.80
41_L 73_I 1.083 0.79
66_A 107_I 1.071 0.78
33_R 65_M 1.068 0.78
73_I 77_W 1.067 0.78
85_P 90_V 1.064 0.77
4_I 115_L 1.062 0.77
142_G 146_P 1.061 0.77
104_T 128_N 1.059 0.77
25_A 109_A 1.056 0.77
106_M 134_S 1.052 0.76
71_G 148_L 1.051 0.76
29_N 147_G 1.049 0.76
25_A 35_L 1.048 0.76
26_M 32_V 1.046 0.76
40_L 127_T 1.045 0.76
100_I 107_I 1.043 0.75
33_R 46_H 1.039 0.75
71_G 110_V 1.037 0.75
29_N 142_G 1.032 0.74
101_S 132_A 1.023 0.73
64_F 145_I 1.022 0.73
115_L 154_R 1.014 0.72
108_S 128_N 1.013 0.72
36_R 51_I 1.008 0.72
86_K 132_A 1.007 0.72
29_N 64_F 1.003 0.71
20_P 97_F 1.001 0.71
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2k3cA10.21025.10.95Contact Map0.322
2nwlA30.92364.50.951Contact Map0.091
4bwzA10.54783.90.953Contact Map0.218
4b19A10.19112.20.958Contact Map1
3arcT20.20381.70.961Contact Map0.095
2kzqA10.22931.70.961Contact Map0.189
3m73A10.72611.40.963Contact Map0.134
2kv5A10.21021.30.964Contact Map1
2k9pA10.2931.10.965Contact Map0.265
4j05A20.936310.966Contact Map0.096

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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