| UniProt: | P0AD42 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11371 | ||
| Length: | 211 (201) | ||
| Sequences: | 2133 | ||
| Seq/Len: | 10.61 |
| YFHB
Paralog alert: 0.61 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 147_Q | 153_W | 4.109 | 1.00 | |
| 169_E | 194_F | 2.761 | 1.00 | |
| 123_Q | 145_Q | 2.649 | 1.00 | |
| 114_D | 140_N | 2.548 | 1.00 | |
| 162_H | 166_A | 2.342 | 1.00 | |
| 101_Q | 132_D | 2.286 | 1.00 | |
| 51_A | 55_K | 2.263 | 1.00 | |
| 108_L | 115_I | 2.211 | 1.00 | |
| 64_S | 160_L | 2.077 | 1.00 | |
| 119_T | 126_V | 2.065 | 1.00 | |
| 32_R | 36_L | 2.041 | 1.00 | |
| 108_L | 139_V | 2.035 | 1.00 | |
| 106_T | 110_S | 2.023 | 1.00 | |
| 123_Q | 127_E | 2.014 | 1.00 | |
| 80_Q | 84_A | 1.986 | 1.00 | |
| 147_Q | 155_L | 1.971 | 1.00 | |
| 107_Y | 112_D | 1.94 | 1.00 | |
| 189_N | 207_L | 1.877 | 1.00 | |
| 105_T | 109_L | 1.856 | 1.00 | |
| 117_L | 136_L | 1.799 | 1.00 | |
| 7_R | 112_D | 1.791 | 1.00 | |
| 116_W | 171_K | 1.783 | 1.00 | |
| 54_I | 58_A | 1.72 | 1.00 | |
| 76_E | 80_Q | 1.703 | 1.00 | |
| 31_L | 36_L | 1.702 | 1.00 | |
| 11_F | 182_Y | 1.635 | 1.00 | |
| 101_Q | 105_T | 1.628 | 1.00 | |
| 126_V | 141_L | 1.61 | 1.00 | |
| 127_E | 131_F | 1.608 | 1.00 | |
| 192_L | 198_R | 1.606 | 1.00 | |
| 83_Q | 128_A | 1.605 | 1.00 | |
| 55_K | 60_R | 1.579 | 1.00 | |
| 18_H | 22_M | 1.575 | 1.00 | |
| 75_S | 78_R | 1.557 | 1.00 | |
| 176_L | 179_Y | 1.55 | 1.00 | |
| 142_I | 170_R | 1.548 | 1.00 | |
| 116_W | 140_N | 1.541 | 1.00 | |
| 161_G | 190_P | 1.539 | 1.00 | |
| 181_G | 191_L | 1.52 | 1.00 | |
| 62_P | 65_L | 1.51 | 1.00 | |
| 117_L | 130_Y | 1.505 | 1.00 | |
| 163_E | 167_Q | 1.489 | 1.00 | |
| 145_Q | 155_L | 1.483 | 1.00 | |
| 105_T | 108_L | 1.48 | 1.00 | |
| 10_F | 116_W | 1.478 | 1.00 | |
| 172_I | 176_L | 1.463 | 1.00 | |
| 74_H | 78_R | 1.453 | 1.00 | |
| 61_W | 65_L | 1.438 | 1.00 | |
| 13_L | 117_L | 1.428 | 1.00 | |
| 130_Y | 141_L | 1.427 | 1.00 | |
| 207_L | 210_L | 1.424 | 1.00 | |
| 29_Y | 85_D | 1.413 | 1.00 | |
| 181_G | 195_C | 1.405 | 0.99 | |
| 168_L | 191_L | 1.402 | 0.99 | |
| 81_T | 85_D | 1.401 | 0.99 | |
| 76_E | 148_R | 1.386 | 0.99 | |
| 189_N | 210_L | 1.382 | 0.99 | |
| 163_E | 166_A | 1.381 | 0.99 | |
| 118_I | 168_L | 1.349 | 0.99 | |
| 179_Y | 195_C | 1.34 | 0.99 | |
| 142_I | 167_Q | 1.335 | 0.99 | |
| 107_Y | 182_Y | 1.322 | 0.99 | |
| 104_L | 136_L | 1.314 | 0.99 | |
| 144_S | 159_C | 1.293 | 0.99 | |
| 33_R | 36_L | 1.292 | 0.99 | |
| 104_L | 115_I | 1.264 | 0.99 | |
| 97_F | 201_V | 1.263 | 0.99 | |
| 142_I | 159_C | 1.25 | 0.99 | |
| 79_L | 124_P | 1.249 | 0.99 | |
| 144_S | 154_V | 1.249 | 0.99 | |
| 147_Q | 151_G | 1.24 | 0.98 | |
| 200_R | 203_P | 1.232 | 0.98 | |
| 108_L | 134_P | 1.221 | 0.98 | |
| 181_G | 192_L | 1.218 | 0.98 | |
| 77_A | 81_T | 1.21 | 0.98 | |
| 13_L | 129_V | 1.192 | 0.98 | |
| 165_V | 169_E | 1.189 | 0.98 | |
| 13_L | 126_V | 1.182 | 0.98 | |
| 19_Q | 97_F | 1.162 | 0.97 | |
| 11_F | 17_L | 1.149 | 0.97 | |
| 195_C | 198_R | 1.144 | 0.97 | |
| 9_V | 107_Y | 1.142 | 0.97 | |
| 91_R | 132_D | 1.142 | 0.97 | |
| 56_G | 59_A | 1.138 | 0.97 | |
| 59_A | 62_P | 1.127 | 0.97 | |
| 193_Y | 210_L | 1.103 | 0.96 | |
| 166_A | 170_R | 1.1 | 0.96 | |
| 10_F | 195_C | 1.086 | 0.96 | |
| 32_R | 35_P | 1.071 | 0.95 | |
| 68_W | 153_W | 1.055 | 0.95 | |
| 53_L | 57_R | 1.054 | 0.95 | |
| 26_F | 74_H | 1.039 | 0.94 | |
| 115_I | 136_L | 1.033 | 0.94 | |
| 115_I | 118_I | 1.032 | 0.94 | |
| 114_D | 139_V | 1.026 | 0.94 | |
| 9_V | 180_S | 1.019 | 0.93 | |
| 78_R | 81_T | 1.016 | 0.93 | |
| 107_Y | 180_S | 1.016 | 0.93 | |
| 17_L | 100_V | 1.015 | 0.93 | |
| 33_R | 85_D | 1.004 | 0.93 | |
| 165_V | 194_F | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3fvvA | 2 | 0.9431 | 100 | 0.443 | Contact Map | 0.748 |
| 4as2A | 4 | 0.981 | 99.9 | 0.474 | Contact Map | 0.694 |
| 4gxtA | 1 | 0.981 | 99.9 | 0.49 | Contact Map | 0.729 |
| 1l7mA | 2 | 0.8768 | 99.9 | 0.529 | Contact Map | 0.855 |
| 3m1yA | 4 | 0.872 | 99.9 | 0.538 | Contact Map | 0.806 |
| 1y8aA | 1 | 0.91 | 99.9 | 0.564 | Contact Map | 0.676 |
| 3p96A | 1 | 0.8815 | 99.9 | 0.569 | Contact Map | 0.742 |
| 1rkuA | 2 | 0.8104 | 99.8 | 0.583 | Contact Map | 0.67 |
| 1nnlA | 2 | 0.9005 | 99.8 | 0.613 | Contact Map | 0.702 |
| 4ap9A | 4 | 0.8483 | 99.8 | 0.613 | Contact Map | 0.629 |
Sequence Conservation (Image Generated using WebLogo v3)