OPENSEQ.org - YCIS - ECOLI GREMLIN

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YCIS - Inner membrane protein YciS

UniProt:	P0ACV4	Sequence MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTLLAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG13904
Length:	102 (94)
Sequences:	107
Seq/Len:	1.14

YCIS
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
71_L	74_A	1.919	0.95
61_G	65_L	1.834	0.94
23_Q	53_F	1.674	0.89
10_V	34_L	1.63	0.87
13_I	27_Q	1.459	0.77
89_T	97_S	1.453	0.77
14_F	53_F	1.446	0.77
91_V	98_S	1.425	0.75
58_L	75_E	1.419	0.75
98_S	101_K	1.375	0.71
90_D	97_S	1.33	0.68
15_V	67_V	1.318	0.67
55_I	64_W	1.311	0.66
34_L	51_A	1.308	0.66
89_T	100_A	1.278	0.63
39_Y	47_V	1.275	0.63
15_V	74_A	1.261	0.62
50_A	56_G	1.216	0.57
19_T	48_L	1.216	0.57
15_V	39_Y	1.215	0.57
64_W	69_V	1.211	0.57
30_F	61_G	1.206	0.56
18_V	41_I	1.199	0.56
30_F	43_T	1.196	0.56
97_S	100_A	1.18	0.54
19_T	46_A	1.175	0.54
22_A	83_N	1.173	0.53
57_W	61_G	1.17	0.53
76_R	84_Q	1.154	0.52
7_F	22_A	1.152	0.51
77_K	82_E	1.151	0.51
8_L	15_V	1.141	0.50
8_L	77_K	1.132	0.49
89_T	98_S	1.123	0.49
2_K	42_S	1.122	0.48
97_S	101_K	1.121	0.48
44_L	65_L	1.114	0.48
89_T	99_A	1.108	0.47
89_T	101_K	1.106	0.47
67_V	70_S	1.103	0.47
74_A	77_K	1.098	0.46
90_D	99_A	1.083	0.45
91_V	99_A	1.082	0.45
28_V	50_A	1.07	0.43
76_R	79_K	1.068	0.43
8_L	27_Q	1.067	0.43
47_V	83_N	1.06	0.43
1_M	53_F	1.056	0.42
91_V	97_S	1.049	0.42
91_V	100_A	1.044	0.41
17_S	60_C	1.043	0.41
90_D	100_A	1.032	0.40
14_F	45_L	1.014	0.38
90_D	98_S	1.005	0.37
45_L	53_F	1.005	0.37
58_L	69_V	1.004	0.37
36_Q	40_R	1.002	0.37

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
2z73A	2	0.9804	51.5	0.901	Contact Map	0.307
4mbsA	2	0.9804	13.3	0.926	Contact Map	0.059
3emlA	1	1	9.8	0.931	Contact Map	0.187
3qf4A	1	0.902	8.9	0.932	Contact Map	0.161
4a82A	4	0.902	8.9	0.932	Contact Map	0.019
3sn6R	1	1	8.8	0.932	Contact Map	0.373
2r4rA	1	0.9902	7.3	0.934	Contact Map	0.183
3g5uA	2	0.902	6.7	0.936	Contact Map	0.053
2k3cA	1	0.3235	6.7	0.936	Contact Map	0.217
4eiyA	1	1	6.4	0.936	Contact Map	0.3

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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