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OPENSEQ.org
YAAH - Inner membrane protein YaaH
UniProt: P0AC98 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11512
Length: 188 (186)
Sequences: 611
Seq/Len: 3.28
YAAH
Paralog alert: 0.09 [within 20: 0.02] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
78_T 102_Y 3.171 1.00
57_E 62_N 3.096 1.00
23_L 41_M 2.55 1.00
136_A 140_I 2.49 1.00
141_G 150_I 2.361 1.00
111_L 115_F 2.28 1.00
107_G 136_A 2.263 1.00
126_F 163_S 2.231 1.00
54_G 70_T 2.178 1.00
25_N 157_G 2.117 1.00
109_F 113_M 1.912 1.00
52_F 55_L 1.896 0.99
104_G 139_A 1.886 0.99
44_F 77_L 1.885 0.99
133_V 137_L 1.882 0.99
148_A 152_F 1.86 0.99
45_Y 71_S 1.847 0.99
51_I 74_S 1.817 0.99
134_L 157_G 1.798 0.99
15_M 168_A 1.703 0.99
72_Y 110_T 1.698 0.99
139_A 143_I 1.674 0.98
18_G 164_A 1.625 0.98
18_G 161_G 1.589 0.98
49_A 53_A 1.58 0.98
29_V 158_L 1.553 0.97
114_F 125_Q 1.512 0.97
126_F 130_S 1.506 0.96
107_G 139_A 1.481 0.96
114_F 129_F 1.468 0.96
155_W 159_I 1.447 0.95
69_F 124_L 1.403 0.94
29_V 155_W 1.369 0.93
104_G 143_I 1.357 0.93
68_A 128_F 1.339 0.92
147_A 151_H 1.325 0.92
137_L 156_I 1.324 0.91
114_F 118_L 1.314 0.91
55_L 70_T 1.308 0.91
130_S 163_S 1.299 0.90
101_V 143_I 1.288 0.90
58_Y 66_L 1.282 0.90
26_L 31_Y 1.282 0.90
125_Q 129_F 1.278 0.89
134_L 160_C 1.277 0.89
44_F 81_A 1.277 0.89
56_L 66_L 1.269 0.89
126_F 159_I 1.264 0.89
28_N 157_G 1.257 0.88
130_S 160_C 1.256 0.88
7_A 12_L 1.247 0.88
9_P 65_G 1.245 0.88
123_V 167_L 1.225 0.87
30_G 79_L 1.211 0.86
51_I 70_T 1.208 0.86
102_Y 106_W 1.2 0.85
130_S 159_I 1.184 0.84
122_R 125_Q 1.172 0.83
19_M 165_I 1.166 0.83
131_L 161_G 1.151 0.82
17_F 20_T 1.147 0.81
22_I 165_I 1.143 0.81
41_M 78_T 1.127 0.80
49_A 74_S 1.113 0.79
68_A 113_M 1.113 0.79
25_N 134_L 1.11 0.78
14_L 17_F 1.11 0.78
111_L 132_T 1.101 0.78
79_L 142_N 1.1 0.77
27_H 34_L 1.092 0.77
21_T 28_N 1.087 0.76
13_G 53_A 1.087 0.76
22_I 161_G 1.079 0.76
51_I 72_Y 1.077 0.75
10_A 121_A 1.068 0.74
75_F 135_F 1.064 0.74
77_L 132_T 1.061 0.74
123_V 127_V 1.048 0.72
118_L 125_Q 1.047 0.72
137_L 149_I 1.044 0.72
68_A 135_F 1.04 0.72
6_L 58_Y 1.038 0.71
114_F 132_T 1.036 0.71
68_A 72_Y 1.032 0.71
48_I 51_I 1.032 0.71
120_G 167_L 1.026 0.70
11_P 63_T 1.026 0.70
117_T 120_G 1.017 0.69
89_G 93_A 1.017 0.69
53_A 110_T 1.015 0.69
50_Q 164_A 1.009 0.68
103_L 138_L 1.009 0.68
131_L 160_C 1.006 0.68
133_V 156_I 1.002 0.68
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1ckkB10.05321.70.968Contact Map
4hy1A20.2661.20.971Contact Map0
2lp1A10.21281.20.971Contact Map
3ux4A30.85111.10.971Contact Map0.3
1iq5B10.05851.10.972Contact Map
4jw1A20.30320.70.975Contact Map0.29
2r1fA20.30850.70.975Contact Map0.089
4i1oB40.30320.70.975Contact Map0.268
4jvsA10.30320.60.976Contact Map0.435
1ycqA10.19150.60.976Contact Map0
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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