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OPENSEQ.org

DPS - DNA protection during starvation protein
UniProt: P0ABT2 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11415
Length: 167 (153)
Sequences: 1409
Seq/Len: 9.21

DPS
Paralog alert: 0.17 [within 20: 0.01] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
113_N 116_D 3.003 1.00
30_V 89_G 2.927 1.00
146_D 150_A 2.832 1.00
46_I 124_R 2.631 1.00
96_Q 100_S 2.347 1.00
146_D 149_T 2.32 1.00
47_T 73_L 2.243 1.00
60_I 64_E 2.23 1.00
50_A 120_E 1.935 1.00
39_Q 103_P 1.92 1.00
67_D 71_T 1.909 1.00
62_V 66_L 1.796 1.00
137_G 145_A 1.759 1.00
136_I 149_T 1.702 1.00
45_L 95_T 1.644 1.00
92_L 101_K 1.613 1.00
126_A 163_E 1.573 1.00
83_R 144_T 1.543 1.00
145_A 149_T 1.539 1.00
69_F 125_Y 1.518 1.00
129_A 152_S 1.489 1.00
60_I 68_G 1.484 1.00
67_D 70_R 1.467 1.00
136_I 145_A 1.453 1.00
42_D 99_N 1.439 0.99
50_A 117_H 1.419 0.99
50_A 107_Y 1.407 0.99
22_S 25_E 1.39 0.99
96_Q 106_S 1.368 0.99
97_V 100_S 1.368 0.99
83_R 141_D 1.362 0.99
34_N 84_A 1.359 0.99
126_A 130_N 1.331 0.99
83_R 156_D 1.326 0.99
34_N 92_L 1.322 0.99
38_I 101_K 1.321 0.99
129_A 156_D 1.318 0.99
51_H 82_E 1.299 0.99
72_A 76_H 1.294 0.99
41_I 98_I 1.291 0.99
65_M 68_G 1.282 0.99
141_D 144_T 1.273 0.98
159_L 163_E 1.266 0.98
87_L 144_T 1.263 0.98
72_A 158_F 1.257 0.98
32_L 135_A 1.246 0.98
60_I 65_M 1.243 0.98
42_D 106_S 1.24 0.98
27_K 31_E 1.235 0.98
107_Y 120_E 1.233 0.98
119_K 166_I 1.232 0.98
142_D 145_A 1.226 0.98
121_L 125_Y 1.214 0.98
79_T 147_I 1.213 0.98
65_M 69_F 1.199 0.98
40_F 80_M 1.194 0.97
51_H 63_H 1.19 0.97
64_E 68_G 1.178 0.97
133_R 156_D 1.166 0.97
75_D 79_T 1.15 0.97
35_R 103_P 1.143 0.96
76_H 151_A 1.13 0.96
125_Y 158_F 1.113 0.96
119_K 123_D 1.112 0.96
142_D 149_T 1.107 0.96
37_V 80_M 1.091 0.95
72_A 154_D 1.091 0.95
143_D 152_S 1.091 0.95
71_T 75_D 1.084 0.95
42_D 95_T 1.081 0.95
122_A 159_L 1.066 0.94
135_A 148_L 1.061 0.94
83_R 87_L 1.059 0.94
59_F 63_H 1.056 0.94
36_Q 135_A 1.056 0.94
49_Q 93_G 1.055 0.94
51_H 59_F 1.049 0.94
59_F 82_E 1.035 0.93
45_L 93_G 1.017 0.92
63_H 82_E 1.016 0.92
90_V 110_D 1.012 0.92
40_F 73_L 1.005 0.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3ak8A1211000.237Contact Map0.756
1zs3A120.97011000.287Contact Map0.633
1zujA40.96411000.298Contact Map0.623
2c2jA10.9941000.331Contact Map0.641
2c2uA111000.343Contact Map0.608
1tjoA411000.345Contact Map0.821
2xgwA111000.354Contact Map0.611
2z90A40.94011000.355Contact Map0.727
2yw6A30.92811000.357Contact Map0.677
4a25A40.97011000.357Contact Map0.683

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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