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OPENSEQ.org
YCED - Uncharacterized protein YceD
UniProt: P0AB28 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11119
Length: 173 (173)
Sequences: 325
Seq/Len: 1.88
YCED
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
118_D 121_A 2.934 1.00
76_C 137_H 2.144 0.99
66_K 85_Y 2.057 0.99
71_L 82_H 1.978 0.99
63_G 88_Y 1.917 0.98
76_C 142_C 1.805 0.97
37_S 128_I 1.795 0.97
33_R 125_D 1.793 0.97
21_D 50_S 1.762 0.97
15_T 22_Y 1.747 0.96
45_V 67_V 1.686 0.95
137_H 142_C 1.677 0.95
77_G 109_I 1.615 0.94
26_Y 31_V 1.577 0.93
162_N 170_L 1.573 0.93
51_F 61_L 1.569 0.93
71_L 80_F 1.563 0.92
164_F 167_L 1.553 0.92
29_D 130_A 1.511 0.91
125_D 135_P 1.496 0.90
61_L 122_M 1.462 0.89
139_S 147_A 1.441 0.88
24_G 166_V 1.431 0.87
62_N 89_C 1.428 0.87
10_L 51_F 1.422 0.87
38_V 43_S 1.398 0.85
95_S 98_Q 1.392 0.85
127_I 173_K 1.368 0.84
7_P 12_P 1.364 0.83
2_Q 5_K 1.342 0.82
34_V 97_E 1.301 0.79
6_L 63_G 1.299 0.79
74_Q 128_I 1.294 0.79
58_L 63_G 1.277 0.77
54_D 106_Y 1.275 0.77
28_P 67_V 1.266 0.77
118_D 131_L 1.262 0.76
15_T 61_L 1.259 0.76
47_C 51_F 1.258 0.76
91_S 102_L 1.252 0.76
34_V 127_I 1.245 0.75
12_P 63_G 1.236 0.74
120_L 130_A 1.213 0.72
164_F 170_L 1.212 0.72
32_E 61_L 1.194 0.70
6_L 97_E 1.192 0.70
16_A 170_L 1.189 0.70
68_T 81_T 1.179 0.69
57_R 168_A 1.177 0.69
99_A 133_V 1.167 0.68
13_V 162_N 1.164 0.68
135_P 168_A 1.16 0.67
48_S 107_E 1.159 0.67
25_I 44_D 1.158 0.67
93_V 99_A 1.156 0.67
17_Q 162_N 1.156 0.67
64_D 85_Y 1.149 0.66
77_G 128_I 1.145 0.66
13_V 107_E 1.143 0.66
163_P 167_L 1.138 0.65
107_E 122_M 1.138 0.65
150_V 158_A 1.127 0.64
48_S 52_A 1.125 0.64
138_D 153_E 1.107 0.62
40_S 70_T 1.103 0.62
15_T 51_F 1.097 0.61
61_L 117_I 1.093 0.61
105_A 152_G 1.089 0.60
102_L 108_P 1.089 0.60
153_E 156_E 1.085 0.60
90_F 108_P 1.078 0.59
56_Q 103_P 1.074 0.59
103_P 106_Y 1.071 0.58
27_T 85_Y 1.069 0.58
167_L 170_L 1.053 0.56
167_L 171_K 1.052 0.56
47_C 63_G 1.051 0.56
91_S 128_I 1.049 0.56
162_N 167_L 1.046 0.55
107_E 156_E 1.041 0.55
107_E 110_E 1.035 0.54
100_E 169_S 1.031 0.54
69_V 157_E 1.026 0.53
54_D 58_L 1.02 0.53
39_V 130_A 1.02 0.53
66_K 87_T 1.02 0.53
113_E 138_D 1.01 0.52
10_L 15_T 1.009 0.51
103_P 108_P 1.008 0.51
74_Q 122_M 1.007 0.51
24_G 129_L 1.004 0.51
65_A 127_I 1.004 0.51
160_K 168_A 1.002 0.51
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3owtC10.11564.10.958Contact Map0.412
2ahmE40.45092.40.963Contact Map0.111
3ndqA10.242820.964Contact Map0.478
1wtjA20.38731.40.967Contact Map0.024
1darA10.38151.40.968Contact Map0.169
3ub0A20.43351.40.968Contact Map0.099
2xexA20.39881.30.968Contact Map0.176
4fn5A10.39311.30.968Contact Map0.175
3j25A10.45661.30.968Contact Map0
1n9rA70.1851.10.969Contact Map0.53
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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