May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

YBAN - Inner membrane protein YbaN
UniProt: P0AAR5 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12843
Length: 125 (120)
Sequences: 681
Seq/Len: 5.67

YBAN
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
47_H 64_Q 2.265 1.00
45_R 49_W 2.239 1.00
7_I 42_S 2.189 1.00
10_G 39_F 2.126 1.00
26_L 30_P 2.091 1.00
14_V 32_I 2.048 1.00
14_V 35_A 2.039 1.00
11_W 39_F 1.993 1.00
13_A 35_A 1.953 1.00
9_I 38_C 1.905 1.00
18_T 22_V 1.87 1.00
10_G 38_C 1.833 1.00
78_I 113_W 1.832 1.00
40_A 47_H 1.804 1.00
44_P 48_A 1.758 1.00
71_R 117_V 1.755 1.00
61_R 65_K 1.748 1.00
19_L 23_L 1.716 1.00
82_L 109_L 1.714 1.00
6_L 42_S 1.695 1.00
17_G 32_I 1.677 1.00
104_I 108_L 1.638 0.99
47_H 51_L 1.625 0.99
15_V 19_L 1.57 0.99
17_G 21_V 1.56 0.99
30_P 33_L 1.484 0.99
99_I 103_V 1.403 0.98
48_A 52_Y 1.397 0.98
72_G 76_R 1.386 0.98
32_I 56_F 1.373 0.98
30_P 34_L 1.368 0.98
83_L 87_I 1.362 0.97
53_R 56_F 1.298 0.96
18_T 21_V 1.283 0.96
29_T 105_L 1.278 0.96
107_C 111_Y 1.274 0.96
29_T 37_W 1.226 0.95
19_L 26_L 1.202 0.94
95_P 99_I 1.175 0.93
35_A 60_L 1.149 0.92
11_W 46_F 1.12 0.90
21_V 28_T 1.118 0.90
94_M 97_V 1.114 0.90
25_V 30_P 1.11 0.90
5_I 9_I 1.109 0.90
85_F 105_L 1.102 0.89
49_W 53_R 1.086 0.88
70_P 73_V 1.077 0.88
92_V 97_V 1.059 0.87
95_P 98_R 1.053 0.86
75_P 79_L 1.044 0.86
69_M 114_R 1.03 0.85
16_L 26_L 1.026 0.84
4_I 8_I 1.016 0.83
29_T 59_Y 1.011 0.83
84_T 88_S 1.006 0.83
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2i68A20.8487.60.942Contact Map0.005
2rddB10.2566.60.943Contact Map0.007
4f4cA10.965.20.946Contact Map0.476
3tx3A20.8564.80.947Contact Map0.191
3dh4A40.8084.60.947Contact Map0.21
4aq5C10.364.60.947Contact Map0.567
2xq2A10.80840.949Contact Map0.26
3o7qA10.923.90.949Contact Map0.104
3wajA10.8643.10.951Contact Map0.12
2cfqA10.91230.952Contact Map0.237

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.014 seconds.