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OPENSEQ.org

YCCT - UPF0319 protein YccT
UniProt: P0A8X4 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13722
Length: 220 (218)
Sequences: 240
Seq/Len: 1.10

YCCT
Paralog alert: 0.14 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
35_D 57_H 3.66 1.00
203_D 206_T 3.608 1.00
196_K 213_W 2.205 0.98
199_F 214_A 2.091 0.97
194_R 198_W 2.07 0.97
142_I 147_E 1.828 0.93
195_L 202_A 1.783 0.92
194_R 197_Y 1.738 0.90
15_P 160_L 1.703 0.89
131_D 151_Y 1.673 0.88
58_Q 152_N 1.634 0.86
36_G 215_E 1.603 0.85
198_W 202_A 1.601 0.85
63_V 199_F 1.574 0.83
57_H 203_D 1.571 0.83
23_L 52_L 1.523 0.81
35_D 206_T 1.516 0.80
23_L 59_L 1.462 0.77
58_Q 133_L 1.457 0.76
139_A 147_E 1.455 0.76
50_I 85_S 1.39 0.71
195_L 210_F 1.386 0.71
135_I 139_A 1.377 0.70
139_A 142_I 1.374 0.70
192_E 209_T 1.354 0.69
98_L 148_V 1.351 0.68
189_V 192_E 1.343 0.68
196_K 210_F 1.336 0.67
203_D 214_A 1.332 0.67
21_T 51_E 1.325 0.66
199_F 211_L 1.311 0.65
59_L 63_V 1.292 0.63
194_R 202_A 1.289 0.63
145_E 159_S 1.279 0.62
180_L 183_I 1.271 0.61
52_L 55_G 1.267 0.61
21_T 35_D 1.266 0.61
143_D 208_N 1.255 0.60
143_D 146_V 1.248 0.59
5_I 10_I 1.218 0.57
106_E 215_E 1.215 0.56
189_V 207_R 1.213 0.56
51_E 84_V 1.213 0.56
197_Y 206_T 1.207 0.55
60_V 148_V 1.203 0.55
50_I 118_L 1.191 0.54
147_E 208_N 1.19 0.54
196_K 214_A 1.187 0.54
211_L 214_A 1.185 0.53
118_L 180_L 1.183 0.53
54_N 57_H 1.178 0.53
48_D 83_V 1.174 0.52
191_T 198_W 1.173 0.52
42_S 198_W 1.164 0.51
83_V 131_D 1.158 0.51
30_D 59_L 1.154 0.50
84_V 155_A 1.153 0.50
172_T 181_D 1.15 0.50
23_L 31_L 1.15 0.50
2_K 30_D 1.148 0.50
152_N 158_A 1.148 0.50
36_G 110_F 1.135 0.49
141_T 155_A 1.134 0.49
12_L 203_D 1.133 0.48
169_D 172_T 1.13 0.48
34_L 39_V 1.126 0.48
38_K 131_D 1.112 0.46
126_I 178_S 1.112 0.46
135_I 142_I 1.105 0.46
110_F 114_P 1.101 0.45
180_L 185_P 1.096 0.45
92_N 95_N 1.094 0.45
189_V 209_T 1.092 0.45
90_L 101_L 1.089 0.44
37_K 121_G 1.086 0.44
28_D 120_D 1.084 0.44
21_T 209_T 1.081 0.44
67_I 214_A 1.074 0.43
80_P 132_I 1.073 0.43
116_L 201_L 1.069 0.42
21_T 88_T 1.069 0.42
7_T 185_P 1.066 0.42
135_I 147_E 1.066 0.42
141_T 208_N 1.061 0.42
158_A 203_D 1.061 0.42
6_V 15_P 1.059 0.42
82_L 189_V 1.051 0.41
51_E 122_D 1.051 0.41
33_V 48_D 1.046 0.40
86_F 99_P 1.045 0.40
191_T 194_R 1.044 0.40
53_D 192_E 1.04 0.40
26_S 63_V 1.04 0.40
61_F 84_V 1.039 0.40
111_D 114_P 1.039 0.40
63_V 77_Y 1.036 0.39
44_L 77_Y 1.03 0.39
7_T 74_E 1.028 0.39
198_W 206_T 1.025 0.38
31_L 99_P 1.023 0.38
53_D 57_H 1.02 0.38
61_F 98_L 1.018 0.38
25_L 59_L 1.018 0.38
153_K 173_L 1.015 0.38
144_Y 175_S 1.009 0.37
205_Q 209_T 1.008 0.37
151_Y 155_A 1.003 0.36
61_F 119_L 1.001 0.36
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2yp6A40.604533.50.945Contact Map0.162
2jttC20.1545220.949Contact Map0.266
3qdeA20.263615.70.953Contact Map0.452
4ankA20.495514.80.953Contact Map0.352
1v7wA10.286411.40.955Contact Map0.353
3ua0A20.51365.20.962Contact Map0.035
3w5mA10.31825.10.962Contact Map0.498
2pmvA40.272750.962Contact Map0.087
1ccdA10.30914.40.963Contact Map0.181
3sb2A60.331840.964Contact Map0.145

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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