| UniProt: | P0A8D0 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11320 | ||
| Length: | 149 (148) | ||
| Sequences: | 1009 | ||
| Seq/Len: | 6.82 |
| NRDR
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 90_H | 115_Q | 3.984 | 1.00 | |
| 5_F | 36_E | 2.935 | 1.00 | |
| 72_R | 75_E | 2.639 | 1.00 | |
| 70_M | 87_A | 2.57 | 1.00 | |
| 80_S | 83_D | 2.551 | 1.00 | |
| 70_M | 84_V | 2.378 | 1.00 | |
| 77_R | 120_D | 2.36 | 1.00 | |
| 143_E | 146_R | 2.225 | 1.00 | |
| 51_V | 108_I | 2.097 | 1.00 | |
| 64_E | 68_S | 2.041 | 1.00 | |
| 58_R | 102_E | 1.971 | 1.00 | |
| 54_S | 106_K | 1.911 | 1.00 | |
| 94_Q | 115_Q | 1.833 | 1.00 | |
| 141_G | 145_A | 1.75 | 1.00 | |
| 67_R | 88_I | 1.673 | 1.00 | |
| 66_L | 112_V | 1.625 | 1.00 | |
| 12_K | 32_L | 1.578 | 1.00 | |
| 98_T | 107_M | 1.571 | 1.00 | |
| 87_A | 119_L | 1.571 | 1.00 | |
| 110_N | 132_R | 1.547 | 0.99 | |
| 67_R | 84_V | 1.536 | 0.99 | |
| 83_D | 86_M | 1.529 | 0.99 | |
| 69_G | 75_E | 1.473 | 0.99 | |
| 91_I | 111_L | 1.449 | 0.99 | |
| 95_L | 103_V | 1.437 | 0.99 | |
| 138_K | 142_E | 1.429 | 0.99 | |
| 138_K | 148_E | 1.398 | 0.99 | |
| 102_E | 132_R | 1.358 | 0.98 | |
| 30_Q | 35_N | 1.353 | 0.98 | |
| 12_K | 69_G | 1.345 | 0.98 | |
| 8_A | 33_V | 1.328 | 0.98 | |
| 87_A | 115_Q | 1.301 | 0.98 | |
| 132_R | 143_E | 1.292 | 0.97 | |
| 94_Q | 114_E | 1.278 | 0.97 | |
| 18_L | 25_V | 1.264 | 0.97 | |
| 10_D | 33_V | 1.236 | 0.96 | |
| 121_K | 133_S | 1.225 | 0.96 | |
| 82_D | 86_M | 1.224 | 0.96 | |
| 83_D | 119_L | 1.218 | 0.96 | |
| 6_C | 13_V | 1.217 | 0.96 | |
| 41_F | 45_E | 1.21 | 0.96 | |
| 63_E | 92_K | 1.203 | 0.96 | |
| 69_G | 72_R | 1.201 | 0.96 | |
| 125_I | 135_E | 1.189 | 0.95 | |
| 58_R | 113_M | 1.184 | 0.95 | |
| 52_V | 102_E | 1.182 | 0.95 | |
| 104_P | 107_M | 1.178 | 0.95 | |
| 12_K | 143_E | 1.17 | 0.95 | |
| 30_Q | 105_S | 1.157 | 0.94 | |
| 63_E | 67_R | 1.15 | 0.94 | |
| 113_M | 136_D | 1.138 | 0.94 | |
| 3_C | 13_V | 1.117 | 0.93 | |
| 15_D | 77_R | 1.114 | 0.93 | |
| 70_M | 112_V | 1.097 | 0.92 | |
| 66_L | 108_I | 1.077 | 0.91 | |
| 52_V | 58_R | 1.076 | 0.91 | |
| 100_E | 107_M | 1.072 | 0.91 | |
| 87_A | 91_I | 1.071 | 0.91 | |
| 141_G | 148_E | 1.071 | 0.91 | |
| 3_C | 6_C | 1.066 | 0.90 | |
| 11_T | 20_G | 1.061 | 0.90 | |
| 66_L | 95_L | 1.051 | 0.89 | |
| 142_E | 145_A | 1.045 | 0.89 | |
| 32_L | 144_I | 1.041 | 0.89 | |
| 61_F | 92_K | 1.022 | 0.88 | |
| 50_R | 105_S | 1.019 | 0.87 | |
| 10_D | 32_L | 1.019 | 0.87 | |
| 60_P | 71_L | 1.016 | 0.87 | |
| 58_R | 76_K | 1.009 | 0.87 | |
| 95_L | 111_L | 1.005 | 0.86 | |
| 77_R | 129_S | 1.001 | 0.86 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 3ga8A | 1 | 0.4698 | 98.1 | 0.861 | Contact Map | 0.533 |
| 1tfiA | 1 | 0.2617 | 97.8 | 0.87 | Contact Map | 0.639 |
| 3k8tA | 1 | 0.651 | 97.5 | 0.879 | Contact Map | 0.22 |
| 3hncA | 2 | 0.651 | 97.4 | 0.88 | Contact Map | 0.517 |
| 2xapA | 3 | 0.651 | 97.4 | 0.881 | Contact Map | 0.584 |
| 3o9xA | 2 | 0.7919 | 94.7 | 0.908 | Contact Map | 0.467 |
| 1qypA | 1 | 0.2685 | 91.9 | 0.917 | Contact Map | 0.755 |
| 4c2mI | 2 | 0.2819 | 90 | 0.921 | Contact Map | 0.754 |
| 1twfI | 1 | 0.3221 | 89.5 | 0.921 | Contact Map | 0.843 |
| 3h0gI | 2 | 0.2617 | 89.2 | 0.922 | Contact Map | 0.617 |
Sequence Conservation (Image Generated using WebLogo v3)