| UniProt: | P0A8C1 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG13686 | ||
| Length: | 107 (106) | ||
| Sequences: | 734 | ||
| Seq/Len: | 6.92 |
| YBJQ
Paralog alert: 0.11 [within 20: 0.02] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 75_D | 105_T | 3.058 | 1.00 | |
| 3_F | 80_I | 3.02 | 1.00 | |
| 18_C | 104_K | 2.942 | 1.00 | |
| 75_D | 104_K | 2.762 | 1.00 | |
| 13_T | 106_R | 2.655 | 1.00 | |
| 10_E | 17_Y | 2.111 | 1.00 | |
| 5_T | 79_G | 1.898 | 1.00 | |
| 23_G | 65_L | 1.891 | 1.00 | |
| 16_E | 104_K | 1.873 | 1.00 | |
| 40_R | 49_A | 1.739 | 1.00 | |
| 4_S | 9_L | 1.724 | 1.00 | |
| 14_I | 78_V | 1.699 | 1.00 | |
| 27_L | 53_E | 1.632 | 1.00 | |
| 62_F | 82_I | 1.609 | 1.00 | |
| 46_R | 64_E | 1.602 | 1.00 | |
| 82_I | 98_V | 1.598 | 1.00 | |
| 15_V | 106_R | 1.598 | 1.00 | |
| 28_G | 41_D | 1.499 | 0.99 | |
| 36_F | 49_A | 1.485 | 0.99 | |
| 55_R | 59_E | 1.444 | 0.99 | |
| 12_Q | 105_T | 1.38 | 0.99 | |
| 67_S | 70_R | 1.36 | 0.98 | |
| 9_L | 12_Q | 1.355 | 0.98 | |
| 62_F | 98_V | 1.354 | 0.98 | |
| 69_A | 74_A | 1.321 | 0.98 | |
| 65_L | 77_V | 1.279 | 0.97 | |
| 6_T | 78_V | 1.26 | 0.97 | |
| 7_P | 78_V | 1.249 | 0.97 | |
| 18_C | 75_D | 1.247 | 0.97 | |
| 35_F | 39_I | 1.245 | 0.97 | |
| 55_R | 68_Q | 1.236 | 0.97 | |
| 15_V | 104_K | 1.227 | 0.96 | |
| 15_V | 105_T | 1.22 | 0.96 | |
| 27_L | 60_I | 1.213 | 0.96 | |
| 30_N | 36_F | 1.188 | 0.95 | |
| 59_E | 63_E | 1.169 | 0.95 | |
| 16_E | 106_R | 1.156 | 0.94 | |
| 33_R | 53_E | 1.149 | 0.94 | |
| 15_V | 77_V | 1.147 | 0.94 | |
| 8_T | 13_T | 1.135 | 0.94 | |
| 63_E | 66_G | 1.135 | 0.94 | |
| 25_A | 60_I | 1.129 | 0.93 | |
| 46_R | 51_E | 1.038 | 0.89 | |
| 7_P | 79_G | 1.035 | 0.89 | |
| 22_T | 68_Q | 1.032 | 0.89 | |
| 19_G | 76_A | 1.03 | 0.88 | |
| 10_E | 26_I | 1.018 | 0.88 | |
| 8_T | 78_V | 1.016 | 0.88 | |
| 31_I | 35_F | 1.003 | 0.87 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1y2iA | 5 | 1 | 100 | 0.048 | Contact Map | 0.738 |
| 1vr4A | 5 | 0.9626 | 100 | 0.074 | Contact Map | 0.775 |
| 3qkbA | 5 | 0.8411 | 100 | 0.267 | Contact Map | 0.577 |
| 2jz7A | 5 | 0.6449 | 99.9 | 0.415 | Contact Map | 0.734 |
| 2y1bA | 1 | 0.785 | 99.2 | 0.666 | Contact Map | 0.622 |
| 2hwkA | 1 | 0.8692 | 10.9 | 0.932 | Contact Map | 0.086 |
| 1rrmA | 2 | 0.9439 | 7.3 | 0.937 | Contact Map | 0.283 |
| 3uhjA | 8 | 0.9159 | 7.2 | 0.937 | Contact Map | 0.345 |
| 1oj7A | 4 | 0.9439 | 6.9 | 0.937 | Contact Map | 0.301 |
| 3ox4A | 4 | 0.972 | 6.9 | 0.937 | Contact Map | 0.286 |
Sequence Conservation (Image Generated using WebLogo v3)