| UniProt: | P0A840 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG11817 | ||
| Length: | 253 (244) | ||
| Sequences: | 1510 | ||
| Seq/Len: | 6.19 |
| SURE
Paralog alert: 0.09 [within 20: 0.00] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 113_G | 120_A | 3.701 | 1.00 | |
| 2_R | 28_D | 3.445 | 1.00 | |
| 170_G | 221_Y | 3.229 | 1.00 | |
| 174_T | 223_S | 3.035 | 1.00 | |
| 123_V | 160_V | 3.006 | 1.00 | |
| 172_R | 221_Y | 2.913 | 1.00 | |
| 163_L | 220_G | 2.875 | 1.00 | |
| 23_L | 88_V | 2.809 | 1.00 | |
| 52_R | 190_D | 2.803 | 1.00 | |
| 87_V | 113_G | 2.579 | 1.00 | |
| 158_I | 224_I | 2.53 | 1.00 | |
| 215_A | 219_E | 2.444 | 1.00 | |
| 216_A | 223_S | 2.354 | 1.00 | |
| 21_K | 135_A | 2.309 | 1.00 | |
| 238_D | 241_S | 2.205 | 1.00 | |
| 5_L | 20_A | 2.166 | 1.00 | |
| 93_A | 131_Y | 2.153 | 1.00 | |
| 187_P | 195_T | 2.137 | 1.00 | |
| 188_Q | 196_L | 2.098 | 1.00 | |
| 174_T | 216_A | 2.03 | 1.00 | |
| 169_K | 221_Y | 2.027 | 1.00 | |
| 123_V | 138_T | 2.016 | 1.00 | |
| 134_A | 160_V | 1.938 | 1.00 | |
| 121_L | 158_I | 1.897 | 1.00 | |
| 55_T | 58_N | 1.856 | 1.00 | |
| 86_I | 142_L | 1.855 | 1.00 | |
| 97_L | 217_V | 1.812 | 1.00 | |
| 11_V | 60_D | 1.8 | 1.00 | |
| 49_S | 64_Q | 1.768 | 1.00 | |
| 5_L | 29_V | 1.755 | 1.00 | |
| 123_V | 158_I | 1.72 | 1.00 | |
| 41_A | 44_S | 1.684 | 1.00 | |
| 38_R | 41_A | 1.675 | 1.00 | |
| 78_A | 187_P | 1.673 | 1.00 | |
| 137_V | 160_V | 1.673 | 1.00 | |
| 26_F | 143_R | 1.657 | 1.00 | |
| 217_V | 223_S | 1.604 | 1.00 | |
| 25_E | 139_C | 1.595 | 0.99 | |
| 14_P | 18_T | 1.592 | 0.99 | |
| 20_A | 60_D | 1.565 | 0.99 | |
| 164_P | 167_Q | 1.508 | 0.99 | |
| 88_V | 123_V | 1.478 | 0.99 | |
| 175_R | 212_T | 1.475 | 0.99 | |
| 139_C | 143_R | 1.473 | 0.99 | |
| 53_T | 79_L | 1.467 | 0.99 | |
| 6_S | 89_S | 1.46 | 0.99 | |
| 97_L | 100_D | 1.432 | 0.99 | |
| 20_A | 31_V | 1.432 | 0.99 | |
| 158_I | 222_V | 1.428 | 0.99 | |
| 3_I | 86_I | 1.427 | 0.99 | |
| 13_A | 93_A | 1.417 | 0.99 | |
| 18_T | 22_A | 1.405 | 0.98 | |
| 136_A | 165_L | 1.393 | 0.98 | |
| 154_R | 233_A | 1.381 | 0.98 | |
| 14_P | 93_A | 1.367 | 0.98 | |
| 89_S | 109_A | 1.365 | 0.98 | |
| 145_L | 149_P | 1.362 | 0.98 | |
| 22_A | 25_E | 1.36 | 0.98 | |
| 137_V | 222_V | 1.357 | 0.98 | |
| 141_I | 158_I | 1.347 | 0.98 | |
| 103_Y | 112_E | 1.313 | 0.97 | |
| 216_A | 221_Y | 1.304 | 0.97 | |
| 137_V | 168_I | 1.298 | 0.97 | |
| 230_D | 234_H | 1.282 | 0.97 | |
| 35_D | 38_R | 1.282 | 0.97 | |
| 111_M | 229_V | 1.271 | 0.96 | |
| 150_L | 156_L | 1.254 | 0.96 | |
| 191_P | 198_W | 1.241 | 0.96 | |
| 22_A | 135_A | 1.24 | 0.96 | |
| 175_R | 211_G | 1.234 | 0.96 | |
| 114_R | 155_I | 1.233 | 0.96 | |
| 6_S | 109_A | 1.231 | 0.96 | |
| 20_A | 24_R | 1.23 | 0.96 | |
| 2_R | 30_Q | 1.221 | 0.95 | |
| 6_S | 113_G | 1.212 | 0.95 | |
| 234_H | 238_D | 1.207 | 0.95 | |
| 50_S | 198_W | 1.203 | 0.95 | |
| 30_Q | 61_I | 1.196 | 0.95 | |
| 46_T | 70_D | 1.191 | 0.94 | |
| 238_D | 242_D | 1.191 | 0.94 | |
| 189_Q | 195_T | 1.189 | 0.94 | |
| 6_S | 72_V | 1.188 | 0.94 | |
| 101_V | 107_V | 1.186 | 0.94 | |
| 5_L | 23_L | 1.181 | 0.94 | |
| 110_A | 120_A | 1.175 | 0.94 | |
| 5_L | 88_V | 1.174 | 0.94 | |
| 130_H | 133_T | 1.169 | 0.94 | |
| 233_A | 236_A | 1.169 | 0.94 | |
| 190_D | 194_N | 1.155 | 0.93 | |
| 210_P | 219_E | 1.14 | 0.92 | |
| 171_I | 224_I | 1.139 | 0.92 | |
| 143_R | 147_K | 1.134 | 0.92 | |
| 192_R | 196_L | 1.126 | 0.92 | |
| 163_L | 168_I | 1.125 | 0.92 | |
| 135_A | 139_C | 1.104 | 0.91 | |
| 80_M | 84_P | 1.098 | 0.91 | |
| 107_V | 227_L | 1.087 | 0.90 | |
| 20_A | 29_V | 1.083 | 0.90 | |
| 41_A | 75_G | 1.078 | 0.89 | |
| 163_L | 167_Q | 1.077 | 0.89 | |
| 43_N | 112_E | 1.074 | 0.89 | |
| 169_K | 220_G | 1.072 | 0.89 | |
| 23_L | 26_F | 1.068 | 0.89 | |
| 42_S | 108_A | 1.061 | 0.88 | |
| 228_H | 233_A | 1.049 | 0.88 | |
| 102_I | 111_M | 1.033 | 0.87 | |
| 43_N | 108_A | 1.033 | 0.87 | |
| 211_G | 215_A | 1.028 | 0.86 | |
| 155_I | 227_L | 1.024 | 0.86 | |
| 144_A | 148_E | 1.023 | 0.86 | |
| 151_R | 154_R | 1.018 | 0.86 | |
| 51_L | 64_Q | 1.015 | 0.85 | |
| 127_G | 162_D | 1.005 | 0.85 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2v4nA | 1 | 1 | 100 | 0.026 | Contact Map | 0.696 |
| 3ty2A | 2 | 0.9802 | 100 | 0.033 | Contact Map | 0.822 |
| 2phjA | 2 | 0.9723 | 100 | 0.034 | Contact Map | 0.806 |
| 1j9jA | 2 | 0.9526 | 100 | 0.05 | Contact Map | 0.761 |
| 1l5xA | 2 | 0.9802 | 100 | 0.073 | Contact Map | 0.691 |
| 2e6cA | 4 | 0.9209 | 100 | 0.078 | Contact Map | 0.739 |
| 3h4tA | 1 | 0.8538 | 45.4 | 0.955 | Contact Map | 0.659 |
| 1iirA | 1 | 0.834 | 41.6 | 0.956 | Contact Map | 0.566 |
| 1rrvA | 2 | 0.917 | 40.2 | 0.956 | Contact Map | 0.663 |
| 2yjnA | 1 | 0.8656 | 22.7 | 0.962 | Contact Map | 0.684 |
Sequence Conservation (Image Generated using WebLogo v3)