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OPENSEQ.org

SMG - Protein smg
UniProt: P0A828 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11605
Length: 157 (157)
Sequences: 178
Seq/Len: 1.13

SMG
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
98_L 111_L 1.665 0.88
9_F 145_E 1.525 0.81
1_M 143_Q 1.462 0.77
1_M 44_L 1.452 0.77
50_L 128_L 1.452 0.77
88_F 129_M 1.445 0.76
49_K 112_A 1.442 0.76
29_D 42_N 1.442 0.76
4_V 61_M 1.424 0.75
124_K 130_V 1.416 0.74
69_S 111_L 1.395 0.73
140_A 144_M 1.384 0.72
135_P 140_A 1.365 0.70
106_V 140_A 1.364 0.70
18_E 74_T 1.361 0.70
92_L 98_L 1.354 0.69
75_P 79_E 1.34 0.68
99_N 137_C 1.315 0.66
13_I 26_L 1.282 0.63
110_V 126_V 1.278 0.63
3_D 7_Y 1.276 0.63
22_D 85_C 1.271 0.62
38_E 83_A 1.251 0.60
89_L 110_V 1.243 0.60
82_D 110_V 1.238 0.59
69_S 73_Y 1.228 0.58
2_F 27_E 1.219 0.57
61_M 108_E 1.206 0.56
93_E 109_R 1.205 0.56
2_F 12_Y 1.202 0.56
24_D 120_L 1.198 0.55
12_Y 31_T 1.197 0.55
125_W 141_Y 1.195 0.55
3_D 121_D 1.182 0.54
8_L 131_L 1.169 0.53
72_I 91_F 1.167 0.53
21_V 143_Q 1.163 0.52
97_V 123_L 1.16 0.52
72_I 96_Q 1.16 0.52
98_L 106_V 1.157 0.52
43_A 129_M 1.154 0.51
125_W 145_E 1.15 0.51
14_H 134_I 1.144 0.50
47_L 124_K 1.14 0.50
40_I 149_F 1.135 0.49
32_D 42_N 1.13 0.49
33_A 48_E 1.123 0.48
21_V 133_N 1.121 0.48
9_F 113_L 1.117 0.48
147_L 153_E 1.109 0.47
40_I 102_T 1.109 0.47
136_G 144_M 1.106 0.47
92_L 107_I 1.103 0.46
24_D 36_E 1.103 0.46
90_L 94_Q 1.098 0.46
2_F 15_T 1.098 0.46
5_L 9_F 1.095 0.46
124_K 128_L 1.094 0.46
60_P 126_V 1.086 0.45
12_Y 47_L 1.084 0.45
6_M 110_V 1.079 0.44
110_V 118_F 1.075 0.44
67_P 83_A 1.072 0.43
5_L 98_L 1.07 0.43
80_R 117_E 1.068 0.43
113_L 129_M 1.068 0.43
59_E 76_E 1.066 0.43
3_D 8_L 1.063 0.43
16_E 117_E 1.062 0.42
44_L 73_Y 1.059 0.42
120_L 129_M 1.057 0.42
88_F 120_L 1.054 0.42
4_V 116_A 1.054 0.42
106_V 157_H 1.053 0.42
9_F 129_M 1.045 0.41
4_V 90_L 1.04 0.40
65_S 70_M 1.036 0.40
36_E 146_E 1.035 0.40
25_K 112_A 1.033 0.40
105_M 122_D 1.029 0.39
86_R 124_K 1.028 0.39
93_E 111_L 1.025 0.39
43_A 46_W 1.023 0.39
74_T 151_V 1.02 0.39
42_N 124_K 1.018 0.38
97_V 141_Y 1.017 0.38
11_T 146_E 1.016 0.38
73_Y 87_G 1.015 0.38
27_E 149_F 1.015 0.38
38_E 75_P 1.014 0.38
22_D 55_E 1.012 0.38
115_N 118_F 1.005 0.37
5_L 46_W 1 0.37
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1z96A20.248418.60.951Contact Map0.092
2g3qA10.267515.40.953Contact Map0.012
2dahA10.2675130.954Contact Map0.117
3ocjA10.363111.40.956Contact Map0.04
4a6dA10.35679.80.957Contact Map0.012
3gpvA20.60519.70.957Contact Map0.23
2i5gA20.35679.40.957Contact Map0.001
3dp7A20.40769.20.957Contact Map0
2ragA40.39499.10.958Contact Map0.032
2jujA10.35678.90.958Contact Map0.113

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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