May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RL32 - 50S ribosomal protein L32
UniProt: P0A7N4 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10890
Length: 57 (55)
Sequences: 864
Seq/Len: 15.71

RL32
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
34_S 44_T 2.959 1.00
31_D 44_T 2.918 1.00
31_D 34_S 2.534 1.00
11_S 15_M 2.249 1.00
33_T 48_Y 2.069 1.00
15_M 18_S 2.021 1.00
39_L 42_H 1.855 1.00
8_P 12_K 1.779 1.00
12_K 15_M 1.777 1.00
30_V 35_G 1.755 1.00
10_R 14_G 1.71 1.00
28_L 37_K 1.705 1.00
3_V 8_P 1.698 1.00
30_V 37_K 1.59 1.00
24_A 27_S 1.545 1.00
2_A 35_G 1.372 0.99
4_Q 8_P 1.273 0.99
18_S 21_A 1.178 0.98
43_I 47_G 1.173 0.98
36_E 46_D 1.076 0.95
8_P 15_M 1.056 0.95
53_K 56_A 1.045 0.94
29_S 40_R 1.028 0.94
38_H 50_R 1.005 0.93
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
3j3w010.982599.90.014Contact Map0.643
4kix01199.90.024Contact Map0.652
2zjrZ10.982599.80.041Contact Map0.69
3v2d510.982599.80.049Contact Map0.689
3bbo210.824698.70.503Contact Map0.393
4c2mI20.631621.30.862Contact Map0.779
3ga8A10.543920.20.864Contact Map0.216
4bqqA20.61419.40.865Contact Map0.029
1twfI10.578916.60.869Contact Map0.911
3o9xA20.543915.70.871Contact Map0.829

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.1793 seconds.