| UniProt: | P0A763 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10650 | ||
| Length: | 143 (140) | ||
| Sequences: | 1908 | ||
| Seq/Len: | 13.63 |
| NDK
Paralog alert: 0.04 [within 20: 0.01] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 44_V | 48_R | 3.746 | 1.00 | |
| 22_N | 29_A | 2.851 | 1.00 | |
| 37_T | 73_V | 2.738 | 1.00 | |
| 94_N | 97_N | 2.672 | 1.00 | |
| 76_V | 129_I | 2.668 | 1.00 | |
| 9_I | 74_V | 2.448 | 1.00 | |
| 121_S | 124_S | 2.401 | 1.00 | |
| 26_R | 106_D | 2.302 | 1.00 | |
| 42_L | 132_F | 2.267 | 1.00 | |
| 90_L | 118_G | 2.219 | 1.00 | |
| 10_I | 14_A | 2.176 | 1.00 | |
| 88_D | 99_L | 2.156 | 1.00 | |
| 83_V | 122_V | 2.137 | 1.00 | |
| 27_F | 86_H | 2.107 | 1.00 | |
| 34_I | 77_L | 2.054 | 1.00 | |
| 25_A | 29_A | 2.029 | 1.00 | |
| 47_A | 67_M | 1.998 | 1.00 | |
| 44_V | 65_E | 1.992 | 1.00 | |
| 24_F | 75_S | 1.918 | 1.00 | |
| 49_G | 131_Y | 1.903 | 1.00 | |
| 81_N | 84_Q | 1.866 | 1.00 | |
| 43_T | 46_Q | 1.838 | 1.00 | |
| 8_S | 86_H | 1.831 | 1.00 | |
| 53_E | 127_R | 1.826 | 1.00 | |
| 4_E | 122_V | 1.783 | 1.00 | |
| 32_F | 85_R | 1.778 | 1.00 | |
| 49_G | 52_A | 1.737 | 1.00 | |
| 32_F | 82_A | 1.734 | 1.00 | |
| 90_L | 116_T | 1.726 | 1.00 | |
| 32_F | 79_G | 1.66 | 1.00 | |
| 79_G | 85_R | 1.651 | 1.00 | |
| 134_G | 137_E | 1.624 | 1.00 | |
| 100_A | 105_A | 1.565 | 1.00 | |
| 20_I | 73_V | 1.555 | 1.00 | |
| 22_N | 25_A | 1.55 | 1.00 | |
| 120_D | 124_S | 1.497 | 1.00 | |
| 124_S | 127_R | 1.487 | 1.00 | |
| 56_G | 61_D | 1.467 | 1.00 | |
| 80_E | 110_S | 1.466 | 1.00 | |
| 24_F | 37_T | 1.449 | 1.00 | |
| 46_Q | 131_Y | 1.445 | 1.00 | |
| 81_N | 85_R | 1.444 | 1.00 | |
| 5_R | 78_E | 1.385 | 0.99 | |
| 40_L | 74_V | 1.382 | 0.99 | |
| 61_D | 65_E | 1.375 | 0.99 | |
| 30_A | 89_L | 1.352 | 0.99 | |
| 86_H | 118_G | 1.338 | 0.99 | |
| 64_V | 68_T | 1.337 | 0.99 | |
| 47_A | 68_T | 1.33 | 0.99 | |
| 48_R | 55_D | 1.325 | 0.99 | |
| 84_Q | 88_D | 1.297 | 0.99 | |
| 5_R | 35_V | 1.291 | 0.99 | |
| 125_A | 129_I | 1.263 | 0.99 | |
| 62_G | 112_T | 1.261 | 0.99 | |
| 38_K | 137_E | 1.251 | 0.99 | |
| 9_I | 72_I | 1.246 | 0.98 | |
| 48_R | 60_F | 1.212 | 0.98 | |
| 94_N | 111_L | 1.179 | 0.98 | |
| 53_E | 124_S | 1.177 | 0.98 | |
| 44_V | 61_D | 1.156 | 0.97 | |
| 27_F | 77_L | 1.153 | 0.97 | |
| 36_G | 138_V | 1.147 | 0.97 | |
| 92_A | 99_L | 1.115 | 0.96 | |
| 83_V | 124_S | 1.111 | 0.96 | |
| 37_T | 75_S | 1.077 | 0.95 | |
| 16_A | 113_E | 1.071 | 0.95 | |
| 35_V | 78_E | 1.056 | 0.95 | |
| 36_G | 76_V | 1.041 | 0.94 | |
| 86_H | 90_L | 1.041 | 0.94 | |
| 14_A | 23_I | 1.036 | 0.94 | |
| 24_F | 73_V | 1.034 | 0.94 | |
| 14_A | 115_G | 1.022 | 0.93 | |
| 5_R | 126_A | 1.019 | 0.93 | |
| 126_A | 130_A | 1.012 | 0.93 | |
| 122_V | 126_A | 1.002 | 0.92 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 4fkxA | 3 | 1 | 100 | -0.012 | Contact Map | 0.754 |
| 1xiqA | 6 | 1 | 100 | 0.001 | Contact Map | 0.853 |
| 1w7wA | 6 | 1 | 100 | 0.002 | Contact Map | 0.713 |
| 2vu5A | 1 | 0.986 | 100 | 0.002 | Contact Map | 0.636 |
| 3r9lA | 1 | 1 | 100 | 0.004 | Contact Map | 0.766 |
| 4c6aA | 1 | 1 | 100 | 0.004 | Contact Map | 0.715 |
| 3b54A | 2 | 1 | 100 | 0.004 | Contact Map | 0.678 |
| 3fkbA | 6 | 1 | 100 | 0.005 | Contact Map | 0.758 |
| 3l7uA | 3 | 1 | 100 | 0.006 | Contact Map | 0.745 |
| 3q8uA | 6 | 0.986 | 100 | 0.007 | Contact Map | 0.781 |
Sequence Conservation (Image Generated using WebLogo v3)