| UniProt: | P0A746 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG12394 | ||
| Length: | 137 (126) | ||
| Sequences: | 2216 | ||
| Seq/Len: | 17.59 |
| MSRB
Paralog alert: 0.20 [within 20: 0.01] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 15_S | 18_Q | 3.352 | 1.00 | |
| 33_G | 121_S | 3.082 | 1.00 | |
| 20_Y | 24_N | 3.01 | 1.00 | |
| 81_I | 94_R | 2.756 | 1.00 | |
| 20_Y | 26_G | 2.629 | 1.00 | |
| 84_L | 89_Q | 2.619 | 1.00 | |
| 25_H | 94_R | 2.586 | 1.00 | |
| 48_I | 100_A | 2.532 | 1.00 | |
| 22_T | 100_A | 2.522 | 1.00 | |
| 93_I | 119_V | 2.407 | 1.00 | |
| 18_Q | 47_L | 2.376 | 1.00 | |
| 82_K | 89_Q | 2.146 | 1.00 | |
| 70_Y | 112_P | 2.103 | 1.00 | |
| 39_K | 62_S | 2.07 | 1.00 | |
| 58_T | 70_Y | 2.047 | 1.00 | |
| 51_A | 96_G | 1.991 | 1.00 | |
| 51_A | 97_N | 1.979 | 1.00 | |
| 49_C | 98_C | 1.935 | 1.00 | |
| 54_F | 117_Y | 1.91 | 1.00 | |
| 22_T | 48_I | 1.907 | 1.00 | |
| 45_H | 127_T | 1.871 | 1.00 | |
| 38_N | 126_F | 1.81 | 1.00 | |
| 85_S | 88_M | 1.702 | 1.00 | |
| 41_D | 129_G | 1.682 | 1.00 | |
| 22_T | 47_L | 1.68 | 1.00 | |
| 107_P | 115_E | 1.665 | 1.00 | |
| 23_Q | 48_I | 1.638 | 1.00 | |
| 21_V | 122_A | 1.602 | 1.00 | |
| 79_R | 94_R | 1.565 | 1.00 | |
| 34_R | 121_S | 1.537 | 1.00 | |
| 80_Y | 115_E | 1.493 | 1.00 | |
| 95_C | 98_C | 1.48 | 1.00 | |
| 29_P | 32_T | 1.471 | 1.00 | |
| 79_R | 99_D | 1.467 | 1.00 | |
| 51_A | 77_S | 1.42 | 1.00 | |
| 10_L | 23_Q | 1.418 | 1.00 | |
| 25_H | 81_I | 1.409 | 1.00 | |
| 108_D | 114_G | 1.396 | 0.99 | |
| 17_M | 20_Y | 1.393 | 0.99 | |
| 35_L | 38_N | 1.391 | 0.99 | |
| 94_R | 99_D | 1.334 | 0.99 | |
| 58_T | 71_E | 1.328 | 0.99 | |
| 39_K | 61_D | 1.328 | 0.99 | |
| 6_S | 9_E | 1.324 | 0.99 | |
| 79_R | 96_G | 1.317 | 0.99 | |
| 34_R | 125_R | 1.306 | 0.99 | |
| 7_A | 24_N | 1.279 | 0.99 | |
| 36_L | 39_K | 1.278 | 0.99 | |
| 45_H | 50_D | 1.26 | 0.99 | |
| 52_P | 73_V | 1.25 | 0.99 | |
| 19_F | 23_Q | 1.201 | 0.98 | |
| 9_E | 12_K | 1.142 | 0.97 | |
| 46_C | 95_C | 1.132 | 0.97 | |
| 41_D | 57_Q | 1.122 | 0.97 | |
| 86_H | 89_Q | 1.119 | 0.96 | |
| 16_E | 20_Y | 1.109 | 0.96 | |
| 43_V | 52_P | 1.099 | 0.96 | |
| 38_N | 44_Y | 1.093 | 0.96 | |
| 40_R | 128_D | 1.073 | 0.95 | |
| 46_C | 98_C | 1.068 | 0.95 | |
| 11_K | 19_F | 1.067 | 0.95 | |
| 70_Y | 113_T | 1.064 | 0.95 | |
| 74_S | 77_S | 1.057 | 0.95 | |
| 35_L | 126_F | 1.051 | 0.94 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 2k8dA | 1 | 0.9708 | 100 | 0.043 | Contact Map | 0.467 |
| 3cxkA | 2 | 0.9708 | 100 | 0.045 | Contact Map | 0.764 |
| 3e0mA | 4 | 1 | 100 | 0.049 | Contact Map | 0.816 |
| 3e0oA | 6 | 0.9854 | 100 | 0.051 | Contact Map | 0.816 |
| 3hcgA | 4 | 0.9927 | 100 | 0.053 | Contact Map | 0.833 |
| 3hcjA | 2 | 0.9927 | 100 | 0.057 | Contact Map | 0.682 |
| 2l1uA | 1 | 0.9562 | 100 | 0.061 | Contact Map | 0.327 |
| 3maoA | 1 | 0.7591 | 100 | 0.277 | Contact Map | 0.653 |
| 2kaoA | 1 | 0.8102 | 100 | 0.287 | Contact Map | 0.249 |
| 3ky9A | 2 | 0.6058 | 18.3 | 0.953 | Contact Map | 0.332 |
Sequence Conservation (Image Generated using WebLogo v3)