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RPS26A_Upf1CH_61to207_add60
Genes: A B A+B
Length: 119 146 262
Sequences: 228 219 20
Seq/Len: 1.92 1.5 0.08
MirrorTree (Pazo et al. 2001) 0.60
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.04 0.05 0.00
2 0.04 0.05 0.00
5 0.04 0.05 0.00
10 0.05 0.05 0.00
20 0.05 0.05 0.00
100 0.05 0.05 0.02
∞ 0.05 0.05 0.08
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.08 < 0.6).
ID Seq/Len Name Options I_Prob Status
7602 0.08 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (r132) Killed
7601 0.08 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (r132) Killed
7600 0.08 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (r132) Killed
7599 0.08 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (r132) Killed
7598 0.08 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed
7597 0.07 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (r132) Killed
7596 0.02 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (r132) Killed
7595 0 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (r132) Killed
7594 0 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed
7593 0.04 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-60, 8) B:(1E-60, 8) msa: HHblits (2015_06) Killed
7592 0.04 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) Killed
7591 0.03 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed
7590 0.04 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: HHblits (2015_06) Killed
7589 0.04 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: HHblits (2015_06) Killed
7588 0.03 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: HHblits (2015_06) Killed
7587 0.04 RPS26A_Upf1CH_61to207_add60 Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
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