|
| Genes: |
A |
B |
A+B |
| Length: |
325 |
481 |
805 |
| Sequences: |
115 |
38662 |
35 |
| Seq/Len: |
0.35 |
80.38 |
0.04 |
| MirrorTree (Pazo et al. 2001) |
0.25 |
|
|
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
|
|
Jackhmmer results
Sequence A: (Date: r132) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
Sequence B: (Date: r132) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
[Show Jackhmmer results] - Maybe useful in deciding what regions to trim. |
|
| Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment.
| Figure 2: Distribution of Δgene across all genomes. |
Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job! |
| ID |
Seq/Len |
Name |
Options |
I_Prob |
Status |
| 7326 |
0.04 |
BmdB_BmdC_alignment_EvalueLowered |
Δgene:(1, ∞) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (r132)
|
|
Killed |
| 7325 |
0.01 |
BmdB_BmdC_alignment_EvalueLowered |
Δgene:(1, 1) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06)
|
|
Killed |
| 7324 |
0.18 |
YUMMY_BmdB_BmdC_Take2 |
Δgene:(1, 100) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132)
|
0.00 |
Done - Shared |
| 7323 |
0.05 |
Yummy_BmdBA2Domain_BmdC |
Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06)
|
|
Killed - Shared |