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OPENSEQ.org
complex
Genes: A B A+B
Length: 314 360 674
Sequences: 130 588 1
Seq/Len: 0.41 1.63 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.02 0.13 0.00
2 0.02 0.14 0.00
5 0.02 0.15 0.00
10 0.02 0.16 0.00
20 0.02 0.16 0.00
100 0.02 0.17 0.00
∞ 0.02 0.19 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
7331 0.04 fullsfrp1wnt2ie-20 Δgene:(0, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (r132) Killed - Shared
7321 0.04 fullsfrp1wnt2ie-20 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (r132) Killed - Shared
7320 0.04 fullsfrp1wnt2ie-20 Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (r132) Killed - Shared
7319 0.03 fullsfrp1wnt2ie-20 Δgene:(1, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (r132) Killed - Shared
7318 0.04 fullsfrp1wnt2ie-20 Δgene:(1, ∞) A:(1E-04, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed - Shared
7292 0.04 fullsfrp1wnt2ie-20 Δgene:(1, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (r132) Killed - Shared
7291 0.04 fullsfrp1wnt2ie-20 Δgene:(0, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed - Shared
7288 0.01 fullsfrp1wnt2ie-02 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed - Shared
7287 0.04 fullsfrp1wnt2ie-20 Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed - Shared
7286 0.01 fullsfrp1wnt2ie-20 Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
7234 0.02 fullsfrp1wnt2 Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (r132) Killed - Shared
7231 0.02 fullsfrp1wnt2 Δgene:(0, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (r132) Killed - Shared
7230 0.01 fullsfrp1wnt2 Δgene:(0, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7229 0.01 fullsfrp1wnt2 Δgene:(0, ∞) A:(1E-80, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
7101 0 sfrp1(1-notlimited) Δgene:(1, 20) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) Killed - Shared
7100 0 sfrp1(0-0) Δgene:(0, 0) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
7099 0 complex Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
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