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Ulp1_425_520 and smt3_61_86

Genes: A B A+B
Length: 96 26 119
Sequences: 1135 421 6
Seq/Len: 11.82 16.19 0.05
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.06 0.05 0.01
2 0.06 0.05 0.01
5 0.06 0.06 0.02
10 0.06 0.06 0.04
20 0.06 0.06 0.05
100 0.07 0.08 0.14
0.09 0.09 0.52
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.05 < 0.6).

ID Seq/Len Name Options I_Prob Status
6391 0.76 Vladimir Δgene:(1, ∞) A:(1E-06, 2) B:(1E-06, 2) msa: HHblits (2015_06) 0.00 Done - Shared
6390 0.18 Vladimir Δgene:(1, 100) A:(1E-06, 2) B:(1E-06, 2) msa: HHblits (2015_06) Killed - Shared
6389 0.05 Ulp1_425_520 and smt3_61_86 Δgene:(1, 20) A:(1E-10, 2) B:(1E-10, 2) msa: HHblits (2015_06) Killed - Shared

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