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OPENSEQ.org
subA-B
Genes: A B A+B
Length: 246 234 470
Sequences: 3701 4834 3120
Seq/Len: 15.04 20.66 6.64
MirrorTree (Pazo et al. 2001) 0.99
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.10 0.09 6.50
2 0.11 0.10 6.50
5 0.11 0.11 6.50
10 0.12 0.11 6.50
20 0.13 0.12 6.50
100 0.17 0.16 6.50
∞ 0.29 0.26 6.50
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results (Scaled_score > 1):
Figure 4: The darker and larger the blue dots, the higher strength in coevolution. 		Inter Residue pairs sorted by strength in coevolution signal:
i j Scaled Score Prob I_Prob
196_E 189_H 4.51 1.00 1.00
192_E 185_E 4.41 1.00 1.00
74_E 70_K 4.21 1.00 1.00
195_V 188_I 4.21 1.00 1.00
193_Q 186_D 4.20 1.00 1.00
236_D 227_K 4.19 1.00 1.00
233_A 224_T 4.17 1.00 1.00
108_E 104_P 4.09 1.00 1.00
45_K 41_A 4.06 1.00 1.00
231_T 222_T 4.06 1.00 1.00
143_I 139_W 4.05 1.00 1.00
217_V 210_V 4.01 1.00 1.00
232_E 223_P 4.01 1.00 1.00
71_K 67_P 3.93 1.00 1.00
228_R 219_R 3.91 1.00 1.00
182_K 177_R 3.84 1.00 1.00
46_D 42_N 3.81 1.00 1.00
219_V 212_I 3.80 1.00 1.00
185_K 180_E 3.74 1.00 1.00
140_L 136_I 3.73 1.00 1.00
200_T 193_L 3.73 1.00 1.00
42_V 38_I 3.72 1.00 1.00
78_C 74_L 3.72 1.00 1.00
76_I 72_I 3.71 1.00 1.00
235_I 226_V 3.71 1.00 1.00
161_C 156_F 3.70 1.00 1.00
199_I 192_I 3.69 1.00 1.00
164_K 159_K 3.67 1.00 1.00
96_Y 92_K 3.66 1.00 1.00
166_T 161_T 3.65 1.00 1.00
184_K 179_N 3.63 1.00 1.00
92_Q 88_H 3.62 1.00 1.00
102_K 98_Y 3.61 1.00 1.00
69_L 65_V 3.60 1.00 1.00
72_I 68_I 3.58 1.00 1.00
186_K 181_D 3.57 1.00 1.00
237_A 228_D 3.56 1.00 1.00
50_I 46_L 3.54 1.00 1.00
43_R 39_K 3.54 1.00 1.00
181_K 176_K 3.53 1.00 1.00
229_I 220_R 3.52 1.00 1.00
75_N 71_H 3.51 1.00 1.00
40_V 36_V 3.50 1.00 1.00
93_R 89_R 3.46 1.00 1.00
112_D 108_A 3.45 1.00 1.00
234_E 225_E 3.45 1.00 1.00
213_S 206_D 3.44 1.00 1.00
107_Y 103_E 3.43 1.00 1.00
70_F 66_E 3.43 1.00 1.00
89_S 85_V 3.43 1.00 1.00
100_N 96_Q 3.42 1.00 1.00
218_G 211_G 3.40 1.00 1.00
118_I 114_V 3.40 1.00 1.00
215_I 208_I 3.37 1.00 1.00
91_V 87_V 3.37 1.00 1.00
104_K 100_V 3.36 1.00 1.00
138_M 134_L 3.35 1.00 1.00
160_Y 155_Y 3.33 1.00 1.00
183_V 178_Y 3.33 1.00 1.00
111_V 107_T 3.32 1.00 1.00
178_F 173_F 3.30 1.00 1.00
121_I 117_V 3.29 1.00 1.00
109_I 105_I 3.28 1.00 1.00
49_V 45_V 3.28 1.00 1.00
162_G 157_A 3.27 1.00 1.00
198_A 191_A 3.27 1.00 1.00
141_I 137_C 3.26 1.00 1.00
64_S 60_R 3.25 1.00 1.00
173_T 168_V 3.24 1.00 1.00
106_G 102_Q 3.24 1.00 1.00
176_T 171_K 3.23 1.00 1.00
154_C 149_S 3.23 1.00 1.00
110_P 106_P 3.22 1.00 1.00
174_E 169_N 3.22 1.00 1.00
116_K 112_Q 3.21 1.00 1.00
220_V 213_C 3.20 1.00 1.00
67_T 63_H 3.20 1.00 1.00
65_T 61_S 3.19 1.00 1.00
66_V 62_V 3.19 1.00 1.00
150_Q 145_Y 3.18 1.00 1.00
152_Y 147_F 3.18 1.00 1.00
230_L 221_L 3.17 1.00 1.00
203_S 196_K 3.15 1.00 1.00
167_A 162_A 3.13 1.00 1.00
56_V 52_Q 3.12 1.00 1.00
197_T 190_T 3.08 1.00 1.00
57_P 53_K 3.08 1.00 1.00
204_T 197_E 3.07 1.00 1.00
97_E 93_L 3.07 1.00 1.00
172_Q 167_Y 3.04 1.00 1.00
117_R 113_R 3.04 1.00 1.00
168_A 163_M 3.03 1.00 1.00
212_P 205_E 3.03 1.00 1.00
113_M 109_Q 3.02 1.00 1.00
52_T 48_T 3.00 1.00 1.00
48_A 44_V 3.00 1.00 1.00
145_E 141_E 3.00 1.00 1.00
51_V 47_A 2.99 1.00 1.00
119_A 115_A 2.98 1.00 1.00
120_D 116_S 2.98 1.00 1.00
159_Y 154_A 2.96 1.00 1.00
139_I 135_L 2.96 1.00 1.00
90_Q 86_L 2.95 1.00 1.00
77_G 73_G 2.94 1.00 1.00
103_Y 99_L 2.94 1.00 1.00
201_C 194_T 2.90 1.00 1.00
101_W 97_Y 2.90 1.00 1.00
62_D 58_D 2.88 1.00 1.00
149_P 144_P 2.87 1.00 1.00
44_G 40_A 2.86 1.00 1.00
95_R 91_R 2.85 1.00 1.00
59_K 55_I 2.85 1.00 1.00
153_K 148_Q 2.84 1.00 1.00
194_T 187_A 2.83 1.00 1.00
238_H 229_Y 2.83 1.00 1.00
226_K 217_G 2.81 1.00 1.00
80_M 76_Y 2.80 1.00 1.00
188_D 183_E 2.80 1.00 1.00
79_V 75_V 2.79 1.00 1.00
63_S 59_E 2.79 1.00 1.00
136_C 132_V 2.78 1.00 1.00
115_C 111_V 2.77 1.00 1.00
61_L 57_Y 2.76 1.00 1.00
177_S 172_T 2.75 1.00 1.00
122_S 118_M 2.73 1.00 1.00
134_L 130_F 2.72 1.00 1.00
191_F 184_L 2.71 1.00 1.00
94_A 90_A 2.69 1.00 1.00
39_S 35_S 2.68 1.00 1.00
205_V 198_S 2.66 1.00 1.00
124_V 120_E 2.65 1.00 1.00
73_T 69_T 2.65 1.00 1.00
206_L 199_F 2.63 1.00 1.00
148_G 143_R 2.63 1.00 1.00
137_C 133_S 2.63 1.00 1.00
214_E 207_N 2.61 1.00 1.00
179_L 174_L 2.59 1.00 1.00
147_Q 142_G 2.58 1.00 1.00
131_M 127_V 2.58 1.00 1.00
99_A 95_Q 2.57 1.00 1.00
240_V 231_A 2.57 1.00 1.00
114_L 110_L 2.55 1.00 1.00
175_S 170_G 2.53 1.00 1.00
58_D 54_S 2.53 1.00 1.00
81_T 77_S 2.52 1.00 1.00
54_K 50_K 2.52 1.00 1.00
187_F 182_L 2.51 1.00 1.00
151_V 146_L 2.51 1.00 1.00
227_F 218_F 2.50 1.00 1.00
165_A 160_A 2.49 1.00 1.00
105_Y 101_Y 2.48 1.00 1.00
87_S 83_Y 2.46 1.00 1.00
211_K 204_T 2.46 1.00 1.00
85_A 81_P 2.44 1.00 1.00
221_T 214_N 2.44 1.00 1.00
241_A 232_A 2.41 1.00 1.00
98_A 94_A 2.38 1.00 1.00
216_E 209_E 2.33 1.00 1.00
41_A 37_G 2.33 1.00 1.00
170_V 165_K 2.32 1.00 1.00
207_S 200_E 2.32 1.00 1.00
222_V 215_E 2.31 1.00 1.00
84_T 80_G 2.31 1.00 1.00
144_D 140_N 2.31 1.00 1.00
163_F 158_W 2.28 1.00 0.99
202_L 195_L 2.23 1.00 0.99
225_P 216_A 2.23 1.00 0.99
83_M 79_M 2.21 1.00 0.99
239_L 230_L 2.21 1.00 0.99
60_L 56_L 2.21 1.00 0.99
210_F 203_M 2.17 1.00 0.99
125_Y 121_Y 2.15 1.00 0.99
37_L 33_A 2.14 1.00 0.99
32_I 29_V 2.13 1.00 0.99
242_L 233_I 2.10 1.00 0.99
157_A 152_S 2.06 1.00 0.99
155_D 150_D 2.04 1.00 0.99
55_K 51_K 2.03 1.00 0.99
171_K 166_N 2.02 1.00 0.99
88_R 84_R 2.01 1.00 0.99
38_T 34_P 1.97 1.00 0.99
29_F 26_L 1.96 1.00 0.99
128_N 124_S 1.95 1.00 0.99
180_E 175_E 1.93 1.00 0.98
156_P 151_P 1.91 1.00 0.98
208_I 201_G 1.83 1.00 0.98
47_C 43_G 1.78 1.00 0.97
15_I 12_T 1.77 1.00 0.97
129_A 125_G 1.72 1.00 0.97
23_Y 20_V 1.59 1.00 0.95
223_E 215_E 1.58 0.99 0.95
53_Q 49_E 1.58 0.99 0.95
190_T 183_E 1.56 0.99 0.94
135_G 131_G 1.54 0.99 0.94
243_A 234_A 1.53 0.99 0.94
22_L 19_L 1.52 0.99 0.94
30_K 27_A 1.52 0.99 0.94
13_I 10_L 1.51 0.99 0.94
209_D 202_Q 1.50 0.99 0.93
127_Q 123_Q 1.49 0.99 0.93
223_E 216_A 1.48 0.99 0.92
8_G 5_G 1.47 0.99 0.92
132_R 128_R 1.44 0.99 0.92
142_G 138_G 1.41 0.99 0.91
130_E 126_G 1.41 0.99 0.90
126_T 122_T 1.41 0.99 0.90
25_V 22_I 1.39 0.98 0.90
123_Q 119_Q 1.39 0.98 0.90
189_W 184_L 1.39 0.98 0.89
19_E 16_S 1.33 0.98 0.87
33_N 30_A 1.32 0.98 0.87
14_T 11_T 1.31 0.98 0.86
26_E 23_E 1.30 0.97 0.86
31_A 28_A 1.27 0.97 0.84
222_V 214_N 1.25 0.96 0.83
21_R 18_K 1.20 0.95 0.79
11_R 8_F 1.20 0.95 0.79
35_G 31_G 1.16 0.94 0.76
12_H 9_S 1.14 0.93 0.74
133_P 129_P 1.14 0.93 0.74
189_W 182_L 1.09 0.91 0.70
16_F 13_F 1.06 0.90 0.67
34_Q 31_G 1.02 0.87 0.63
27_Y 24_Y 0.99 0.84 0.58
68_H 64_K 0.97 0.83 0.57
35_G 32_G 0.94 0.80 0.53
34_Q 30_A 0.91 0.78 0.49
9_F 6_Y 0.90 0.76 0.47
28_A 25_A 0.87 0.73 0.44
36_G 32_G 0.85 0.71 0.42
158_G 153_G 0.84 0.69 0.40
18_P 15_P 0.81 0.65 0.36
86_D 82_D 0.80 0.63 0.35
17_S 14_S 0.78 0.61 0.33
146_E 141_E 0.77 0.59 0.32
211_K 203_M 0.76 0.57 0.30
10_D 7_S 0.72 0.52 0.26
224_N 215_E 0.64 0.40 0.18
146_E 142_G 0.54 0.26 0.10
24_Q 21_Q 0.43 0.15 0.05
188_D 181_D 0.43 0.15 0.05
198_A 47_A 0.39 0.12 0.04
193_Q 183_E 0.39 0.12 0.04
51_V 191_A 0.38 0.12 0.03
169_G 164_G 0.38 0.11 0.03
46_D 41_A 0.35 0.10 0.03
45_K 42_N 0.35 0.10 0.03
126_T 120_E 0.34 0.09 0.02
20_G 17_G 0.33 0.09 0.02
119_A 119_Q 0.33 0.09 0.02
121_I 121_Y 0.32 0.08 0.02
202_L 193_L 0.31 0.08 0.02
225_P 218_F 0.29 0.07 0.02
124_V 124_S 0.28 0.07 0.01
212_P 204_T 0.27 0.06 0.01
190_T 186_D 0.27 0.06 0.01
117_R 117_V 0.26 0.06 0.01
8_G 4_R 0.26 0.06 0.01
194_T 40_A 0.26 0.06 0.01
110_P 110_L 0.26 0.06 0.01
224_N 217_G 0.26 0.06 0.01
44_G 187_A 0.25 0.06 0.01
129_A 124_S 0.25 0.05 0.01
105_Y 100_V 0.24 0.05 0.01
50_I 37_G 0.24 0.05 0.01
118_I 118_M 0.24 0.05 0.01
150_Q 157_A 0.23 0.05 0.01
162_G 145_Y 0.23 0.05 0.01
188_D 182_L 0.23 0.05 0.01
236_D 231_A 0.23 0.05 0.01
227_F 73_G 0.23 0.05 0.01
234_E 219_R 0.23 0.05 0.01
73_T 98_Y 0.23 0.05 0.01
228_R 225_E 0.23 0.05 0.01
102_K 69_T 0.23 0.05 0.01
116_K 116_S 0.23 0.05 0.01
77_G 218_F 0.23 0.05 0.01
8_G 3_E 0.22 0.05 0.01
111_V 138_G 0.22 0.05 0.01
50_I 137_C 0.22 0.05 0.01
41_A 46_L 0.22 0.05 0.01
126_T 126_G 0.22 0.05 0.01
46_D 40_A 0.22 0.05 0.01
73_T 71_H 0.22 0.05 0.01
44_G 42_N 0.21 0.04 0.01
141_I 46_L 0.21 0.04 0.01
75_N 69_T 0.21 0.04 0.01
122_S 122_T 0.21 0.04 0.01
240_V 227_K 0.21 0.04 0.01
203_S 194_T 0.21 0.04 0.01
12_H 12_T 0.21 0.04 0.01
39_S 75_V 0.21 0.04 0.01
142_G 107_T 0.21 0.04 0.01
15_I 9_S 0.20 0.04 0.01
79_V 35_S 0.20 0.04 0.01
129_A 121_Y 0.20 0.04 0.01
226_K 219_R 0.20 0.04 0.01
33_N 27_A 0.20 0.04 0.01
197_T 177_R 0.20 0.04 0.01
11_R 9_S 0.20 0.04 0.01
182_K 190_T 0.19 0.04 0.01
106_G 101_Y 0.19 0.04 0.01
12_H 8_F 0.19 0.04 0.01
227_F 220_R 0.19 0.04 0.01
8_G 2_A 0.19 0.04 0.01
221_T 217_G 0.19 0.04 0.01
120_D 120_E 0.19 0.04 0.01
47_C 40_A 0.19 0.04 0.01
148_G 142_G 0.18 0.04 0.01
123_Q 120_E 0.18 0.04 0.01
22_L 11_T 0.18 0.04 0.01
9_F 7_S 0.18 0.04 0.01
244_E 231_A 0.18 0.04 0.01
188_D 186_D 0.18 0.04 0.01
198_A 38_I 0.18 0.04 0.01
113_M 113_R 0.18 0.04 0.01
200_T 177_R 0.18 0.04 0.01
87_S 76_Y 0.18 0.04 0.01
227_F 211_G 0.18 0.04 0.01
26_E 18_K 0.17 0.04 0.01
27_Y 25_A 0.17 0.04 0.01
45_K 181_D 0.17 0.04 0.01
132_R 124_S 0.17 0.04 0.01
21_R 23_E 0.17 0.04 0.01
111_V 72_I 0.17 0.04 0.01
14_T 19_L 0.17 0.04 0.01
80_M 83_Y 0.17 0.04 0.01
48_A 137_C 0.17 0.04 0.01
44_G 43_G 0.17 0.04 0.01
147_Q 143_R 0.17 0.03 0.01
42_V 191_A 0.17 0.03 0.01
12_H 10_L 0.17 0.03 0.01
182_K 193_L 0.17 0.03 0.01
218_G 218_F 0.17 0.03 0.01
150_Q 143_R 0.17 0.03 0.01
41_A 146_L 0.17 0.03 0.01
44_G 184_L 0.17 0.03 0.01
243_A 233_I 0.17 0.03 0.01
123_Q 122_T 0.17 0.03 0.01
204_T 195_L 0.16 0.03 0.00
10_D 6_Y 0.16 0.03 0.00
206_L 197_E 0.16 0.03 0.00
37_L 32_G 0.16 0.03 0.00
234_E 222_T 0.16 0.03 0.00
231_T 225_E 0.16 0.03 0.00
13_I 9_S 0.16 0.03 0.00
18_P 6_Y 0.16 0.03 0.00
207_S 198_S 0.16 0.03 0.00
221_T 40_A 0.16 0.03 0.00
114_L 72_I 0.16 0.03 0.00
164_K 180_E 0.16 0.03 0.00
221_T 216_A 0.16 0.03 0.00
18_P 14_S 0.16 0.03 0.00
244_E 234_A 0.16 0.03 0.00
17_S 15_P 0.16 0.03 0.00
114_L 94_A 0.16 0.03 0.00
148_G 145_Y 0.16 0.03 0.00
221_T 215_E 0.16 0.03 0.00
82_G 78_G 0.15 0.03 0.00
195_V 210_V 0.15 0.03 0.00
123_Q 123_Q 0.15 0.03 0.00
112_D 112_Q 0.15 0.03 0.00
139_I 161_T 0.15 0.03 0.00
186_K 179_N 0.15 0.03 0.00
186_K 41_A 0.15 0.03 0.00
109_I 109_Q 0.15 0.03 0.00
221_T 184_L 0.15 0.03 0.00
114_L 114_V 0.15 0.03 0.00
166_T 135_L 0.15 0.03 0.00
30_K 30_A 0.15 0.03 0.00
151_V 37_G 0.15 0.03 0.00
141_I 44_V 0.15 0.03 0.00
11_R 4_R 0.15 0.03 0.00
13_I 11_T 0.15 0.03 0.00
126_T 119_Q 0.15 0.03 0.00
76_I 107_T 0.15 0.03 0.00
26_E 24_Y 0.15 0.03 0.00
233_A 222_T 0.15 0.03 0.00
13_I 8_F 0.15 0.03 0.00
9_F 15_P 0.14 0.03 0.00
238_H 228_D 0.14 0.03 0.00
244_E 233_I 0.14 0.03 0.00
14_T 10_L 0.14 0.03 0.00
185_K 159_K 0.14 0.03 0.00
196_E 232_A 0.14 0.03 0.00
135_G 128_R 0.14 0.03 0.00
12_H 4_R 0.14 0.03 0.00
118_I 90_A 0.14 0.03 0.00
11_R 10_L 0.14 0.03 0.00
237_A 229_Y 0.14 0.03 0.00
217_V 188_I 0.14 0.03 0.00
47_C 42_N 0.14 0.03 0.00
162_G 147_F 0.14 0.03 0.00
76_I 110_L 0.14 0.03 0.00
184_K 181_D 0.14 0.03 0.00
132_R 131_G 0.14 0.03 0.00
243_A 232_A 0.14 0.03 0.00
231_T 224_T 0.14 0.03 0.00
127_Q 119_Q 0.14 0.03 0.00
152_Y 157_A 0.14 0.03 0.00
242_L 232_A 0.14 0.03 0.00
194_T 38_I 0.14 0.03 0.00
42_V 187_A 0.14 0.03 0.00
44_G 214_N 0.14 0.03 0.00
17_S 6_Y 0.14 0.03 0.00
242_L 229_Y 0.14 0.03 0.00
241_A 189_H 0.13 0.03 0.00
122_S 149_S 0.13 0.03 0.00
237_A 232_A 0.13 0.03 0.00
27_Y 27_A 0.13 0.03 0.00
27_Y 23_E 0.13 0.03 0.00
241_A 234_A 0.13 0.03 0.00
46_D 43_G 0.13 0.03 0.00
243_A 231_A 0.13 0.03 0.00
47_C 187_A 0.13 0.03 0.00
67_T 220_R 0.13 0.03 0.00
242_L 234_A 0.13 0.03 0.00
194_T 43_G 0.13 0.03 0.00
102_K 104_P 0.13 0.03 0.00
24_Q 24_Y 0.13 0.03 0.00
241_A 233_I 0.13 0.03 0.00
235_I 221_L 0.13 0.03 0.00
10_D 8_F 0.13 0.03 0.00
28_A 24_Y 0.13 0.03 0.00
23_Y 7_S 0.13 0.03 0.00
53_Q 33_A 0.13 0.03 0.00
31_A 27_A 0.12 0.03 0.00
14_T 6_Y 0.12 0.03 0.00
25_V 23_E 0.12 0.03 0.00
8_G 9_S 0.12 0.03 0.00
18_P 20_V 0.12 0.03 0.00
108_E 98_Y 0.12 0.03 0.00
26_E 22_I 0.12 0.03 0.00
9_F 11_T 0.12 0.03 0.00
241_A 4_R 0.12 0.03 0.00
175_S 34_P 0.12 0.03 0.00
73_T 104_P 0.12 0.03 0.00
241_A 228_D 0.12 0.03 0.00
193_Q 179_N 0.12 0.03 0.00
11_R 7_S 0.12 0.03 0.00
108_E 69_T 0.12 0.03 0.00
73_T 70_K 0.12 0.03 0.00
197_T 182_L 0.12 0.03 0.00
240_V 232_A 0.12 0.03 0.00
19_E 13_F 0.12 0.03 0.00
91_V 66_E 0.12 0.03 0.00
240_V 234_A 0.12 0.03 0.00
23_Y 15_P 0.12 0.03 0.00
74_E 69_T 0.12 0.03 0.00
86_D 119_Q 0.12 0.03 0.00
38_T 170_G 0.12 0.03 0.00
127_Q 126_G 0.12 0.03 0.00
199_I 195_L 0.12 0.03 0.00
15_I 10_L 0.12 0.03 0.00
20_G 21_Q 0.12 0.03 0.00
14_T 5_G 0.12 0.03 0.00
25_V 19_L 0.12 0.03 0.00
144_D 139_W 0.12 0.03 0.00
22_L 22_I 0.12 0.03 0.00
10_D 20_V 0.12 0.03 0.00
17_S 20_V 0.12 0.03 0.00
47_C 44_V 0.12 0.03 0.00
37_L 49_E 0.12 0.03 0.00
241_A 231_A 0.12 0.03 0.00
12_H 5_G 0.12 0.03 0.00
48_A 43_G 0.12 0.03 0.00
31_A 25_A 0.12 0.03 0.00
97_E 113_R 0.12 0.03 0.00
16_F 16_S 0.12 0.03 0.00
230_L 226_V 0.12 0.03 0.00
9_F 14_S 0.12 0.03 0.00
229_I 218_F 0.12 0.03 0.00
68_H 77_S 0.12 0.03 0.00
228_R 212_I 0.12 0.03 0.00
178_F 190_T 0.12 0.03 0.00
35_G 30_A 0.12 0.03 0.00
24_Q 17_G 0.12 0.03 0.00
94_A 114_V 0.12 0.03 0.00
12_H 16_S 0.12 0.03 0.00
81_T 64_K 0.12 0.03 0.00
8_G 11_T 0.12 0.03 0.00
70_F 87_V 0.11 0.03 0.00
14_T 12_T 0.11 0.03 0.00
Figure 5: The i (protein A) and j (protein B) are positions as given in the query sequences.

Scaled Score = raw_score/average(raw_scores)
Prob = P(contact | scaled_score, seq/len)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)
WARNING: The input alignment may be corrupted!
  • Sequence A is very similar to Sequence B (HHΔ = 0.076), these maybe paralogs! HHΔ is a measure (0 to 1) of how different two alignments are (the larger the value the more different they are).
ID Seq/Len Name Options I_Prob Status
6309 0 subA-B Δgene:(1, 1) A:(1E-04, 2) B:(1E-04, 2) msa: HHblits (2015_06) Killed - Shared
6308 0 Prova3 Δgene:(1, 20) A:(1E-20, 2) B:(1E-20, 2) msa: HHblits (2015_06) Killed - Shared
6307 0.01 subA-B Δgene:(1, ∞) A:(1E-04, 2) B:(1E-04, 2) msa: HHblits (2015_06) Killed - Shared
6306 0 Prova3 Δgene:(1, ∞) A:(1E-20, 2) B:(1E-20, 2) msa: HHblits (2015_06) Killed - Shared
6147 6.64 subA-B Δgene:(0, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: HHblits (2015_06) 1.00 Done - Shared
6146 6.62 subA-B Δgene:(0, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) 1.00 Done - Shared
6128 0 subA-B Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
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