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OPENSEQ.org
type3_type2
Genes: A B A+B
Length: 258 250 481
Sequences: 2502 2676 1974
Seq/Len: 9.7 10.7 4.1
MirrorTree (Pazo et al. 2001) 0.99
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.05 0.11 3.89
2 0.05 0.11 3.89
5 0.05 0.11 3.89
10 0.05 0.12 3.89
20 0.06 0.12 3.89
100 0.09 0.16 3.88
∞ 0.21 0.27 3.91
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results (Scaled_score > 1):
Figure 4: The darker and larger the blue dots, the higher strength in coevolution. 		Inter Residue pairs sorted by strength in coevolution signal:
i j Scaled Score Prob I_Prob
142_D 141_E 4.65 1.00 1.00
188_D 187_D 4.47 1.00 1.00
187_D 186_E 4.30 1.00 1.00
233_Q 241_Q 4.21 1.00 1.00
191_E 190_H 4.17 1.00 1.00
71_D 69_P 4.14 1.00 1.00
231_K 239_T 4.12 1.00 1.00
190_I 189_I 4.11 1.00 1.00
213_F 211_L 3.97 1.00 1.00
73_I 71_I 3.94 1.00 1.00
140_Y 139_H 3.94 1.00 1.00
115_L 114_V 3.90 1.00 1.00
236_K 244_N 3.89 1.00 1.00
69_L 67_L 3.88 1.00 1.00
237_D 245_D 3.88 1.00 1.00
219_G 217_E 3.87 1.00 1.00
209_D 207_D 3.87 1.00 1.00
42_D 41_N 3.84 1.00 1.00
195_K 194_L 3.84 1.00 1.00
66_L 64_V 3.81 1.00 1.00
208_Y 206_G 3.78 1.00 1.00
105_D 104_Y 3.75 1.00 1.00
232_P 240_S 3.75 1.00 1.00
137_Y 136_I 3.72 1.00 1.00
38_I 37_I 3.71 1.00 1.00
36_I 35_L 3.69 1.00 1.00
158_T 157_F 3.68 1.00 1.00
183_D 182_E 3.67 1.00 1.00
182_D 181_D 3.67 1.00 1.00
194_L 193_L 3.67 1.00 1.00
75_V 73_A 3.65 1.00 1.00
41_S 40_T 3.62 1.00 1.00
235_I 243_I 3.56 1.00 1.00
186_V 185_L 3.55 1.00 1.00
163_I 162_T 3.55 1.00 1.00
179_D 178_R 3.52 1.00 1.00
108_V 107_T 3.50 1.00 1.00
68_K 66_L 3.50 1.00 1.00
149_Y 148_Y 3.49 1.00 1.00
215_T 213_I 3.48 1.00 1.00
46_L 45_I 3.47 1.00 1.00
240_V 248_E 3.47 1.00 1.00
184_M 183_L 3.45 1.00 1.00
89_N 87_D 3.45 1.00 1.00
171_A 170_A 3.45 1.00 1.00
211_L 209_I 3.45 1.00 1.00
93_I 91_K 3.43 1.00 1.00
238_I 246_R 3.43 1.00 1.00
185_K 184_E 3.43 1.00 1.00
228_K 236_R 3.42 1.00 1.00
207_T 205_N 3.40 1.00 1.00
53_T 52_S 3.40 1.00 1.00
101_T 100_I 3.40 1.00 1.00
138_A 137_A 3.40 1.00 1.00
52_V 51_S 3.38 1.00 1.00
106_I 105_P 3.37 1.00 1.00
157_Y 156_Y 3.35 1.00 1.00
88_I 86_V 3.34 1.00 1.00
47_A 46_A 3.33 1.00 1.00
234_E 242_E 3.33 1.00 1.00
214_A 212_A 3.32 1.00 1.00
103_N 102_G 3.31 1.00 1.00
199_K 198_E 3.31 1.00 1.00
198_S 197_K 3.28 1.00 1.00
200_T 199_S 3.27 1.00 1.00
173_Q 172_K 3.26 1.00 1.00
44_I 43_V 3.26 1.00 1.00
86_I 84_V 3.26 1.00 1.00
67_Y 65_S 3.25 1.00 1.00
193_A 192_A 3.25 1.00 1.00
45_V 44_V 3.24 1.00 1.00
170_S 169_V 3.24 1.00 1.00
99_L 98_K 3.24 1.00 1.00
229_I 237_K 3.22 1.00 1.00
39_M 38_K 3.22 1.00 1.00
165_V 164_I 3.19 1.00 1.00
164_S 163_A 3.18 1.00 1.00
114_R 113_E 3.18 1.00 1.00
180_Y 179_W 3.18 1.00 1.00
97_N 96_S 3.17 1.00 1.00
218_K 216_D 3.16 1.00 1.00
181_K 180_N 3.15 1.00 1.00
107_P 106_P 3.15 1.00 1.00
109_E 108_K 3.13 1.00 1.00
175_L 174_F 3.11 1.00 1.00
118_I 117_I 3.11 1.00 1.00
196_T 195_T 3.08 1.00 1.00
230_F 238_L 3.08 1.00 1.00
169_T 168_S 3.07 1.00 1.00
216_I 214_I 3.05 1.00 1.00
112_V 111_V 3.05 1.00 1.00
161_K 160_K 3.03 1.00 1.00
151_S 150_V 3.03 1.00 1.00
135_F 134_L 3.03 1.00 1.00
76_A 74_V 3.03 1.00 1.00
63_T 61_L 3.02 1.00 1.00
174_T 173_T 3.02 1.00 1.00
178_M 177_K 3.01 1.00 1.00
113_R 112_S 3.01 1.00 1.00
241_K 249_A 2.99 1.00 1.00
48_A 47_T 2.99 1.00 1.00
60_D 59_E 2.97 1.00 1.00
110_I 109_L 2.97 1.00 1.00
90_T 88_K 2.96 1.00 1.00
206_L 204_F 2.95 1.00 1.00
217_R 215_G 2.94 1.00 1.00
35_A 34_S 2.94 1.00 1.00
159_G 158_P 2.93 1.00 1.00
147_Q 146_S 2.91 1.00 1.00
133_V 132_V 2.89 1.00 1.00
189_A 188_A 2.88 1.00 1.00
72_K 70_D 2.88 1.00 1.00
192_L 191_I 2.88 1.00 1.00
220_A 218_N 2.86 1.00 1.00
74_A 72_G 2.83 1.00 1.00
117_D 116_K 2.82 1.00 1.00
136_I 135_L 2.82 1.00 1.00
226_Y 234_R 2.81 1.00 1.00
172_A 171_A 2.79 1.00 1.00
58_E 57_M 2.79 1.00 1.00
121_G 120_E 2.77 1.00 1.00
239_L 247_L 2.74 1.00 1.00
146_Y 145_F 2.73 1.00 1.00
167_A 166_K 2.73 1.00 1.00
102_Y 101_Y 2.72 1.00 1.00
59_Q 58_S 2.71 1.00 1.00
201_T 200_V 2.71 1.00 1.00
77_V 75_Y 2.71 1.00 1.00
57_L 56_A 2.71 1.00 1.00
156_N 155_S 2.70 1.00 1.00
116_S 115_A 2.68 1.00 1.00
98_Y 97_Y 2.67 1.00 1.00
55_T 54_P 2.66 1.00 1.00
64_E 62_S 2.65 1.00 1.00
100_K 99_R 2.64 1.00 1.00
50_R 49_K 2.64 1.00 1.00
78_A 76_S 2.63 1.00 1.00
128_L 127_V 2.61 1.00 1.00
131_F 130_F 2.60 1.00 1.00
104_E 103_E 2.60 1.00 1.00
84_A 82_Y 2.59 1.00 1.00
87_L 85_L 2.58 1.00 1.00
134_S 133_S 2.53 1.00 1.00
168_N 167_G 2.53 1.00 1.00
82_A 80_P 2.51 1.00 1.00
94_H 92_V 2.51 1.00 1.00
62_S 60_T 2.50 1.00 1.00
125_H 124_S 2.50 1.00 1.00
150_T 149_Q 2.49 1.00 1.00
40_A 39_A 2.49 1.00 1.00
145_G 144_G 2.48 1.00 1.00
91_A 89_S 2.48 1.00 1.00
210_R 208_T 2.46 1.00 1.00
242_T 250_L 2.45 1.00 1.00
54_S 53_S 2.45 1.00 1.00
119_K 118_M 2.44 1.00 1.00
111_L 110_L 2.39 1.00 1.00
122_Y 121_A 2.39 1.00 1.00
26_L 25_L 2.37 1.00 1.00
12_I 11_T 2.36 1.00 1.00
81_T 79_G 2.35 1.00 1.00
80_L 78_M 2.34 1.00 1.00
144_Y 143_N 2.34 1.00 1.00
212_E 210_E 2.33 1.00 0.99
197_L 196_L 2.29 1.00 0.99
37_G 36_G 2.28 1.00 0.99
51_K 50_K 2.28 1.00 0.99
29_I 28_V 2.27 1.00 0.99
141_D 140_D 2.24 1.00 0.99
34_T 33_T 2.23 1.00 0.99
176_L 175_L 2.23 1.00 0.99
20_Y 19_G 2.19 1.00 0.99
160_W 159_W 2.19 1.00 0.99
70_N 68_T 2.17 1.00 0.99
227_Q 235_F 2.16 1.00 0.99
92_R 90_R 2.16 1.00 0.99
148_L 147_L 2.16 1.00 0.99
152_N 151_D 2.12 1.00 0.99
10_T 9_L 2.08 1.00 0.99
224_E 232_G 2.06 1.00 0.99
19_L 18_L 2.05 1.00 0.99
43_G 42_G 2.01 1.00 0.99
177_Q 176_E 1.99 1.00 0.99
202_D 201_E 1.96 1.00 0.98
22_V 21_I 1.92 1.00 0.98
162_A 161_A 1.88 1.00 0.98
85_E 83_R 1.88 1.00 0.98
16_E 15_S 1.84 1.00 0.98
5_R 4_R 1.84 1.00 0.98
126_G 125_G 1.83 1.00 0.97
154_S 153_S 1.82 1.00 0.97
225_V 233_P 1.81 1.00 0.97
49_E 48_E 1.81 1.00 0.97
4_R 3_D 1.79 0.99 0.97
11_T 10_T 1.78 0.99 0.97
23_E 22_D 1.77 0.99 0.97
143_R 142_F 1.75 0.99 0.97
27_E 26_T 1.72 0.99 0.96
3_S 2_T 1.65 0.99 0.95
8_S 7_F 1.63 0.99 0.95
18_R 17_K 1.60 0.99 0.94
139_G 138_G 1.60 0.99 0.94
95_A 93_A 1.56 0.98 0.94
124_Q 123_Q 1.51 0.98 0.92
203_S 202_G 1.50 0.98 0.92
9_R 8_S 1.50 0.98 0.92
28_S 27_A 1.50 0.98 0.92
13_F 12_F 1.43 0.97 0.90
127_G 126_G 1.42 0.96 0.89
56_L 55_L 1.35 0.95 0.86
96_Q 94_H 1.34 0.95 0.85
24_Y 23_Y 1.29 0.93 0.82
153_P 152_P 1.25 0.92 0.80
32_A 30_Q 1.22 0.90 0.78
6_Y 5_Y 1.19 0.89 0.76
123_T 122_T 1.19 0.89 0.75
30_S 29_K 1.18 0.88 0.74
223_G 231_K 1.17 0.88 0.74
15_P 14_P 1.13 0.85 0.70
120_Q 119_Q 1.12 0.85 0.69
33_G 32_V 1.09 0.82 0.67
14_S 13_S 1.08 0.81 0.65
65_K 63_K 1.07 0.80 0.64
31_H 30_Q 1.03 0.77 0.60
132_G 131_G 1.00 0.73 0.56
130_P 129_P 0.98 0.71 0.53
25_A 24_A 0.97 0.71 0.53
32_A 31_G 0.96 0.69 0.51
7_D 6_S 0.95 0.69 0.50
205_A 203_E 0.87 0.58 0.39
204_S 203_E 0.83 0.53 0.35
31_H 29_K 0.79 0.48 0.30
221_N 219_P 0.79 0.48 0.30
155_G 154_G 0.75 0.43 0.26
21_Q 20_Q 0.64 0.29 0.15
203_S 201_E 0.63 0.27 0.14
33_G 31_G 0.61 0.26 0.13
204_S 202_G 0.55 0.20 0.09
17_G 16_G 0.52 0.17 0.08
193_A 46_A 0.48 0.15 0.06
47_A 192_A 0.47 0.14 0.06
83_D 81_D 0.47 0.14 0.05
96_Q 95_T 0.46 0.13 0.05
129_R 128_R 0.44 0.12 0.04
166_G 165_G 0.41 0.10 0.04
228_K 242_E 0.39 0.09 0.03
143_R 143_N 0.38 0.09 0.03
70_N 70_D 0.38 0.09 0.03
234_E 236_R 0.38 0.09 0.03
72_K 68_T 0.37 0.09 0.03
188_D 184_E 0.36 0.08 0.02
185_K 187_D 0.35 0.08 0.02
3_S 3_D 0.33 0.07 0.02
60_D 58_S 0.32 0.07 0.02
227_Q 72_G 0.31 0.06 0.02
240_V 244_N 0.30 0.06 0.01
57_L 55_L 0.29 0.06 0.01
236_K 248_E 0.29 0.06 0.01
40_A 188_A 0.29 0.06 0.01
189_A 39_A 0.29 0.06 0.01
139_G 107_T 0.29 0.06 0.01
2_G 2_T 0.28 0.06 0.01
241_K 190_H 0.28 0.05 0.01
108_V 138_G 0.27 0.05 0.01
4_R 4_R 0.27 0.05 0.01
56_L 54_P 0.27 0.05 0.01
37_G 45_I 0.26 0.05 0.01
74_A 235_F 0.26 0.05 0.01
46_L 36_G 0.26 0.05 0.01
4_R 2_T 0.26 0.05 0.01
147_Q 158_P 0.25 0.05 0.01
5_R 3_D 0.25 0.05 0.01
40_A 41_N 0.24 0.04 0.01
120_Q 123_Q 0.24 0.04 0.01
138_A 43_V 0.24 0.04 0.01
42_D 39_A 0.24 0.04 0.01
148_L 36_G 0.24 0.04 0.01
3_S 4_R 0.24 0.04 0.01
99_L 68_T 0.24 0.04 0.01
159_G 146_S 0.24 0.04 0.01
59_Q 57_M 0.24 0.04 0.01
44_I 137_A 0.23 0.04 0.01
30_S 26_T 0.23 0.04 0.01
123_T 119_Q 0.23 0.04 0.01
12_I 8_S 0.23 0.04 0.01
9_R 11_T 0.23 0.04 0.01
23_E 17_K 0.23 0.04 0.01
120_Q 122_T 0.23 0.04 0.01
145_G 143_N 0.22 0.04 0.01
8_S 8_S 0.22 0.04 0.01
19_L 10_T 0.22 0.04 0.01
70_N 98_K 0.22 0.04 0.01
2_G 3_D 0.22 0.04 0.01
9_R 7_F 0.22 0.04 0.01
231_K 242_E 0.22 0.04 0.01
79_G 77_G 0.21 0.04 0.01
108_V 71_I 0.21 0.04 0.01
124_Q 119_Q 0.21 0.04 0.01
46_L 137_A 0.21 0.04 0.01
191_E 249_A 0.21 0.04 0.01
5_R 2_T 0.21 0.04 0.01
11_T 18_L 0.21 0.04 0.01
73_I 107_T 0.21 0.04 0.01
138_A 45_I 0.21 0.04 0.01
37_G 147_L 0.21 0.04 0.01
15_P 13_S 0.20 0.04 0.01
234_E 239_T 0.20 0.04 0.01
43_G 41_N 0.20 0.04 0.01
18_R 22_D 0.20 0.04 0.01
14_S 14_P 0.20 0.04 0.01
144_Y 144_G 0.20 0.04 0.01
42_D 42_G 0.20 0.04 0.01
193_A 37_I 0.20 0.04 0.01
23_E 23_Y 0.20 0.04 0.01
219_G 215_G 0.20 0.04 0.01
105_D 70_D 0.20 0.04 0.01
119_K 150_V 0.20 0.04 0.01
6_Y 6_S 0.20 0.04 0.01
21_Q 16_G 0.20 0.04 0.01
24_Y 20_Q 0.19 0.04 0.01
76_A 34_S 0.19 0.04 0.01
21_Q 23_Y 0.19 0.04 0.01
35_A 74_V 0.19 0.03 0.01
172_A 33_T 0.19 0.03 0.01
129_R 131_G 0.19 0.03 0.01
38_I 192_A 0.19 0.03 0.01
15_P 5_Y 0.19 0.03 0.01
6_Y 14_P 0.19 0.03 0.01
195_K 178_R 0.19 0.03 0.01
24_Y 22_D 0.19 0.03 0.01
24_Y 24_A 0.19 0.03 0.01
233_Q 239_T 0.19 0.03 0.01
132_G 128_R 0.19 0.03 0.01
105_D 68_T 0.19 0.03 0.01
7_D 5_Y 0.18 0.03 0.01
179_D 194_L 0.18 0.03 0.01
34_T 171_A 0.18 0.03 0.01
151_S 118_M 0.18 0.03 0.01
109_E 112_S 0.18 0.03 0.01
41_S 41_N 0.18 0.03 0.01
2_G 4_R 0.18 0.03 0.01
25_A 23_Y 0.18 0.03 0.01
17_G 20_Q 0.18 0.03 0.01
231_K 241_Q 0.18 0.03 0.01
194_L 209_I 0.18 0.03 0.01
227_Q 212_A 0.18 0.03 0.00
42_D 40_T 0.17 0.03 0.00
124_Q 126_G 0.17 0.03 0.00
123_T 123_Q 0.17 0.03 0.00
9_R 9_L 0.17 0.03 0.00
43_G 188_A 0.17 0.03 0.00
10_T 8_S 0.17 0.03 0.00
127_G 123_Q 0.17 0.03 0.00
220_A 215_G 0.17 0.03 0.00
147_Q 144_G 0.17 0.03 0.00
72_K 104_Y 0.17 0.03 0.00
196_T 174_F 0.17 0.03 0.00
111_L 105_P 0.17 0.03 0.00
13_F 16_G 0.16 0.03 0.00
33_G 29_K 0.16 0.03 0.00
189_A 42_G 0.16 0.03 0.00
145_G 146_S 0.16 0.03 0.00
129_R 81_D 0.16 0.03 0.00
217_R 217_E 0.16 0.03 0.00
211_L 193_L 0.16 0.03 0.00
23_E 24_A 0.16 0.03 0.00
11_T 5_Y 0.16 0.03 0.00
44_I 42_G 0.16 0.03 0.00
112_V 115_A 0.16 0.03 0.00
121_G 124_S 0.16 0.03 0.00
243_G 249_A 0.16 0.03 0.00
175_L 195_T 0.16 0.03 0.00
11_T 9_L 0.15 0.03 0.00
22_V 23_Y 0.15 0.03 0.00
23_E 21_I 0.15 0.03 0.00
25_A 27_A 0.15 0.03 0.00
20_Y 13_S 0.15 0.03 0.00
176_L 132_V 0.15 0.03 0.00
133_V 175_L 0.15 0.03 0.00
6_Y 10_T 0.15 0.03 0.00
132_G 81_D 0.15 0.03 0.00
22_V 22_D 0.15 0.03 0.00
83_D 131_G 0.15 0.03 0.00
124_Q 122_T 0.15 0.03 0.00
27_E 29_K 0.15 0.03 0.00
190_I 44_V 0.15 0.03 0.00
10_T 10_T 0.15 0.03 0.00
40_A 42_G 0.15 0.03 0.00
4_R 8_S 0.15 0.03 0.00
69_L 73_A 0.15 0.03 0.00
25_A 22_D 0.15 0.03 0.00
43_G 43_V 0.15 0.03 0.00
237_D 246_R 0.15 0.03 0.00
45_V 189_I 0.15 0.03 0.00
238_I 245_D 0.15 0.03 0.00
132_G 152_P 0.15 0.03 0.00
14_S 5_Y 0.15 0.03 0.00
153_P 131_G 0.15 0.03 0.00
175_L 178_R 0.14 0.03 0.00
70_N 104_Y 0.14 0.03 0.00
8_S 6_S 0.14 0.03 0.00
132_G 24_A 0.14 0.03 0.00
27_E 27_A 0.14 0.03 0.00
28_S 24_A 0.14 0.03 0.00
14_S 19_G 0.14 0.03 0.00
17_G 12_F 0.14 0.03 0.00
126_G 126_G 0.14 0.03 0.00
20_Y 14_P 0.14 0.03 0.00
141_D 144_G 0.14 0.03 0.00
7_D 7_F 0.14 0.03 0.00
78_A 164_I 0.14 0.03 0.00
165_V 76_S 0.14 0.03 0.00
230_F 243_I 0.14 0.03 0.00
136_I 162_T 0.14 0.03 0.00
83_D 128_R 0.14 0.03 0.00
127_G 125_G 0.14 0.03 0.00
131_F 121_A 0.14 0.03 0.00
21_Q 24_A 0.14 0.03 0.00
27_E 23_Y 0.14 0.03 0.00
241_K 186_E 0.14 0.03 0.00
192_L 178_R 0.14 0.03 0.00
106_I 110_L 0.14 0.03 0.00
14_S 16_G 0.14 0.03 0.00
25_A 131_G 0.14 0.03 0.00
19_L 16_G 0.14 0.03 0.00
241_K 245_D 0.14 0.03 0.00
243_G 250_L 0.14 0.03 0.00
17_G 13_S 0.14 0.03 0.00
148_L 135_L 0.14 0.03 0.00
179_D 174_F 0.14 0.03 0.00
78_A 63_K 0.14 0.03 0.00
8_S 9_L 0.14 0.03 0.00
115_L 89_S 0.14 0.03 0.00
150_T 159_W 0.14 0.03 0.00
9_R 3_D 0.14 0.03 0.00
15_P 19_G 0.14 0.03 0.00
237_D 241_Q 0.14 0.03 0.00
6_Y 13_S 0.14 0.03 0.00
17_G 24_A 0.14 0.03 0.00
25_A 16_G 0.13 0.03 0.00
22_V 18_L 0.13 0.03 0.00
183_D 40_T 0.13 0.03 0.00
14_S 6_S 0.13 0.03 0.00
163_I 135_L 0.13 0.03 0.00
7_D 13_S 0.13 0.03 0.00
75_V 67_L 0.13 0.03 0.00
24_Y 21_I 0.13 0.03 0.00
122_Y 127_V 0.13 0.03 0.00
154_S 152_P 0.13 0.03 0.00
11_T 11_T 0.13 0.03 0.00
187_D 249_A 0.13 0.03 0.00
50_R 210_E 0.13 0.03 0.00
136_I 147_L 0.13 0.03 0.00
136_I 164_I 0.13 0.03 0.00
22_V 24_A 0.13 0.03 0.00
186_V 42_G 0.13 0.03 0.00
153_P 153_S 0.13 0.03 0.00
25_A 20_Q 0.13 0.03 0.00
12_I 10_T 0.13 0.03 0.00
230_F 242_E 0.13 0.03 0.00
165_V 135_L 0.13 0.03 0.00
179_D 191_I 0.13 0.03 0.00
233_Q 245_D 0.13 0.03 0.00
106_I 104_Y 0.13 0.03 0.00
231_K 240_S 0.13 0.03 0.00
24_Y 26_T 0.13 0.03 0.00
17_G 18_L 0.13 0.03 0.00
91_A 114_V 0.13 0.03 0.00
145_G 140_D 0.13 0.03 0.00
105_D 98_K 0.13 0.03 0.00
129_R 122_T 0.13 0.03 0.00
175_L 191_I 0.13 0.03 0.00
218_K 139_H 0.13 0.03 0.00
4_R 7_F 0.13 0.03 0.00
43_G 39_A 0.13 0.03 0.00
235_I 238_L 0.13 0.03 0.00
54_S 55_L 0.13 0.03 0.00
139_G 140_D 0.13 0.03 0.00
187_D 217_E 0.13 0.03 0.00
56_L 53_S 0.13 0.03 0.00
99_L 104_Y 0.13 0.03 0.00
23_E 20_Q 0.13 0.03 0.00
212_E 49_K 0.13 0.03 0.00
19_L 21_I 0.13 0.03 0.00
237_D 249_A 0.13 0.02 0.00
190_I 211_L 0.13 0.02 0.00
144_Y 142_F 0.13 0.02 0.00
192_L 174_F 0.13 0.02 0.00
236_K 206_G 0.13 0.02 0.00
238_I 250_L 0.13 0.02 0.00
5_R 10_T 0.13 0.02 0.00
65_K 76_S 0.13 0.02 0.00
129_R 119_Q 0.12 0.02 0.00
21_Q 22_D 0.12 0.02 0.00
Figure 5: The i (protein A) and j (protein B) are positions as given in the query sequences.

Scaled Score = raw_score/average(raw_scores)
Prob = P(contact | scaled_score, seq/len)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)
WARNING: The input alignment may be corrupted!
  • Sequence A is very similar to Sequence B (HHΔ = 0.081), these maybe paralogs! HHΔ is a measure (0 to 1) of how different two alignments are (the larger the value the more different they are).
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