May 4, 2021 - We are working on upgrading the webserver, some pages may not work. OPENSEQ.org |
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Show HHblits results] - Maybe useful in deciding what regions to trim. | [||||||||||||||||||||||||
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. | Figure 2: Distribution of Δgene across all genomes. | Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job! |
GREMLIN results (Scaled_score > 1): Figure 4: The darker and larger the blue dots, the higher strength in coevolution.
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Inter Residue pairs sorted by strength in coevolution signal:
Scaled Score = raw_score/average(raw_scores) Prob = P(contact | scaled_score, seq/len) I_Prob = P(contact | scaled_score, seq/len, top_inter_score) |
ID | Seq/Len | Name | Options | I_Prob | Status |
6081 | 4.53 | cytb_80_cIV_C_80_human | Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2016_06b) | 0.14 | Done - Shared |
5385 | 3.07 | cytb_80_1_cIV_C_80_1_human | Δgene:(1, ∞) A:(1E-80, 1) B:(1E-80, 1) msa: HHblits (2015_06) | 0.18 | Done - Shared |
5384 | 3.07 | cytb_80_cIV_C_80_human | Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: HHblits (2015_06) | 0.19 | Done - Shared |
5383 | 3.27 | cytb_4_cIV_C_4_human | Δgene:(1, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: HHblits (2015_06) | 0.07 | Done - Shared |
5381 | 3.26 | cytb_4_cIV_C_4_human | Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: HHblits (2015_06) | 0.05 | Done - Shared |