|
| Genes: |
A |
B |
A+B |
| Length: |
207 |
181 |
376 |
| Sequences: |
17 |
1163 |
13 |
| Seq/Len: |
0.08 |
6.43 |
0.03 |
| MirrorTree (Pazo et al. 2001) |
0.64 |
|
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Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
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Jackhmmer results
Sequence A: (Date: 2015_06) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
Sequence B: (Date: 2015_06) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
[Show Jackhmmer results] - Maybe useful in deciding what regions to trim. |
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| Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment.
| Figure 2: Distribution of Δgene across all genomes. |
Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job! |
| ID |
Seq/Len |
Name |
Options |
I_Prob |
Status |
| 4920 |
1.81 |
cI_5_20_cI_6_60_tt |
Δgene:(1, ∞) A:(1E-20, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06)
|
0.25 |
Done - Shared |
| 4919 |
1.84 |
cI_5_10_cI_6_40_tt |
Δgene:(1, ∞) A:(1E-10, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06)
|
0.20 |
Done - Shared |
| 4918 |
1.94 |
cI_5_20_cI_6_40_tt |
Δgene:(1, ∞) A:(1E-20, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06)
|
0.33 |
Done - Shared |
| 4917 |
0.03 |
cI_5_40_cI_6_40_tt |
Δgene:(1, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06)
|
|
Killed - Shared |
| 4916 |
1.9 |
cI_5_20_cI_6_20_tt |
Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06)
|
0.28 |
Done - Shared |
| 4914 |
1.82 |
cI_5_10_cI_6_10_tt |
Δgene:(1, ∞) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06)
|
0.25 |
Done - Shared |
| 4913 |
1.97 |
cI_5_6_cI_6_6_tt |
Δgene:(1, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: Jackhmmer (2015_06)
|
0.02 |
Done - Shared |
| 4912 |
1.86 |
cI_5_4_cI_6_4_tt |
Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06)
|
0.08 |
Done - Shared |