|
Genes: |
A |
B |
A+B |
Length: |
227 |
318 |
540 |
Sequences: |
4037 |
4127 |
2708 |
Seq/Len: |
17.78 |
12.98 |
5.01 |
MirrorTree (Pazo et al. 2001) |
0.78 |
|
|
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
|
|
Jackhmmer results
Sequence A: (Date: 2015_06) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
Sequence B: (Date: 2015_06) BEFORE and AFTER the coverage filter was applied, to remove sequences that don't cover at least 75% of query length. Regions above red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len.
[Show Jackhmmer results] - Maybe useful in deciding what regions to trim. |
|
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment.
| Figure 2: Distribution of Δgene across all genomes. |
Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job! |
ID |
Seq/Len |
Name |
Options |
I_Prob |
Status |
4579 |
4.19 |
cIV_B_60_cI_H_20_human |
Δgene:(1, ∞) A:(1E-60, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06)
|
0.21 |
Done - Shared |
4574 |
4.21 |
cIV_B_60_cI_H_40_human |
Δgene:(1, ∞) A:(1E-60, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06)
|
0.36 |
Done - Shared |
4573 |
3.59 |
cIV_B_80_cI_H_60_human |
Δgene:(1, ∞) A:(1E-80, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06)
|
0.33 |
Done - Shared |
4568 |
3.98 |
cIV_B_60_cI_H_80_human |
Δgene:(1, ∞) A:(1E-60, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06)
|
0.28 |
Done - Shared |
4567 |
3.6 |
cIV_B_80_cI_H_60_human |
Δgene:(1, ∞) A:(1E-80, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06)
|
0.21 |
Done - Shared |
4565 |
4.2 |
cIV_B_60_cI_H_60_human |
Δgene:(1, ∞) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2015_06)
|
0.12 |
Done - Shared |
4564 |
5.01 |
cIV_B_40_cI_H_40_human |
Δgene:(1, ∞) A:(1E-40, 8) B:(1E-40, 8) msa: Jackhmmer (2015_06)
|
0.02 |
Done - Shared |
4563 |
3.53 |
cIV_B_80_cI_H_80_human |
Δgene:(1, ∞) A:(1E-80, 8) B:(1E-80, 8) msa: Jackhmmer (2015_06)
|
0.19 |
Done - Shared |