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1QGV_A Spliceosomal U5 15 kDa protein 1L2Z_A(1) CD2 receptor binding protein 2 C-ter fragment
Genes: A B A+B
Length: 142 62 204
Sequences: 187 27 1
Seq/Len: 1.32 0.44 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.01 0.00 0.00
2 0.01 0.00 0.00
5 0.01 0.00 0.00
10 0.01 0.00 0.00
20 0.01 0.00 0.00
100 0.01 0.02 0.00
∞ 0.01 0.02 0.02
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
4578 0.01 1QGV_A Spliceosomal U5 15 kDa protein 1L2Z_A(1) CD2 receptor binding protein 2 C-ter fragment Δgene:(1, 100) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) Killed - Shared
4118 0 1QGV_A Spliceosomal U5 15 kDa protein 1L2Z_A(1) CD2 receptor binding protein 2 C-ter fragment Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) Killed - Shared
4083 0 1QGV_A Spliceosomal U5 15 kDa protein 1L2Z_A(1) CD2 receptor binding protein 2 C-ter fragment Δgene:(1, 20) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) Killed - Shared
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