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OPENSEQ.org

1AUQ_ Von willebrand factor dom A1 1M0Z_B Glycoprotein IB-a

Genes: A B A+B
Length: 208 290 458
Sequences: 9802 1619 36
Seq/Len: 47.12 5.58 0.08
MirrorTree (Pazo et al. 2001) 0.84
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.13 0.02 0.00
2 0.14 0.02 0.01
5 0.16 0.03 0.02
10 0.17 0.03 0.04
20 0.17 0.03 0.07
100 0.19 0.04 0.18
0.24 0.08 0.47
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.08 < 0.6).

ID Seq/Len Name Options I_Prob Status
4111 0.02 1AUQ_ Von willebrand factor dom A1 1M0Z_B Glycoprotein IB-a Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_06) Killed - Shared
4074 0.08 1AUQ_ Von willebrand factor dom A1 1M0Z_B Glycoprotein IB-a Δgene:(1, 20) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (2015_06) Killed - Shared

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