May 4, 2021 - We are working on upgrading the webserver, some pages may not work. OPENSEQ.org |
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Show Jackhmmer results] - Maybe useful in deciding what regions to trim. | [||||||||||||||||||||||||
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. | Figure 2: Distribution of Δgene across all genomes. | Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job! |
GREMLIN results (Scaled_score > 1): Figure 4: The darker and larger the blue dots, the higher strength in coevolution.
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Inter Residue pairs sorted by strength in coevolution signal:
Scaled Score = raw_score/average(raw_scores) Prob = P(contact | scaled_score, seq/len) I_Prob = P(contact | scaled_score, seq/len, top_inter_score) |
ID | Seq/Len | Name | Options | I_Prob | Status |
3016 | 0.42 | cI_E_6_cIII_cyt1_4_Pdenitr | Δgene:(1, ∞) A:(1E-06, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) | 0.00 | Done - Shared |
2798 | 0.41 | cI_E2_cIII_cyt1_2_Pdenitr | Δgene:(1, ∞) A:(1E-02, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) | 0.00 | Done - Shared |
2797 | 0.42 | cI_E4_cIII_cyt1_Pdenitr | Δgene:(1, ∞) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) | 0.00 | Done - Shared |
2796 | 0.39 | cI_E_cIII_cyt1_Pdenitr | Δgene:(1, ∞) A:(1E-20, 8) B:(1E-04, 8) msa: Jackhmmer (2015_06) | 0.00 | Done - Shared |