May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
MYOTACTA
Genes: A B A+B
Length: 498 377 844
Sequences: 44 13012 19
Seq/Len: 0.09 34.51 0.02
MirrorTree (Pazo et al. 2001) 0.02
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.04 0.04 0.00
2 0.04 0.04 0.00
5 0.04 0.05 0.00
10 0.04 0.06 0.00
20 0.04 0.06 0.00
100 0.04 0.12 0.01
∞ 0.04 0.17 0.02
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.02 < 0.6).
ID Seq/Len Name Options I_Prob Status
2016 0.07 MYOTACTA Δgene:(1, ∞) A:(1E-40, 8) B:(1E-04, 8) msa: Jackhmmer (2015_03) Killed
2014 0.02 MYOTACTA Δgene:(1, ∞) A:(1E-02, 8) B:(1E-04, 8) msa: Jackhmmer (2015_03) Killed
2003 0.05 MYOTACTA Δgene:(1, ∞) A:(1E-80, 8) B:(1E-20, 8) msa: Jackhmmer (2015_03) Killed - Shared
1993 0 MYOTACTA Δgene:(1, 20) A:(1E-80, 8) B:(1E-20, 8) msa: Jackhmmer (2015_03) Killed - Shared
1991 0.01 MYOTACTA Δgene:(1, 20) A:(1E-40, 8) B:(1E-20, 8) msa: Jackhmmer (2015_03) Killed - Shared
1981 0 MYOTACTA Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2015_03) Killed - Shared
Page generated in 0.0163 seconds.