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ATPA - ATPB decreasing evalue to 1E-401E-60
Genes: A B A+B
Length: 513 460 938
Sequences: 4091 1977 12
Seq/Len: 7.97 4.3 0.01
MirrorTree (Pazo et al. 2001) 0.95
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.08 0.01 0.00
2 0.36 0.01 0.00
5 0.37 0.01 0.01
10 0.38 0.01 0.01
20 0.40 0.01 0.01
100 0.44 0.03 0.02
∞ 0.69 0.32 0.05
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).
ID Seq/Len Name Options I_Prob Status
0192 1.22 ATPA - ATPB decreasing evalue to 1E-401E-60 Δgene:(1, 20) A:(1E-80, 4) B:(1E-80, 4) msa: Jackhmmer (2014_03) 1.00 Done
0191 0 ATPA - ATPB decreasing evalue to 1E-401E-60 Δgene:(1, 20) A:(1E-60, 8) B:(1E-60, 8) msa: Jackhmmer (2014_03) Killed
0190 0 ATPA - ATPB decreasing evalue to 1E-401E-60 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2014_03) Killed
0020 0.01 ATPA - ATPB decreasing evalue to 1E-401E-60 Δgene:(1, 20) A:(1E-40, 8) B:(1E-60, 8) (2013_03) Killed - Shared
0019 0.9 ATPA - ATPB decreasing evalue to 1E-60 Δgene:(1, 20) A:(1E-60, 8) B:(1E-60, 8) (2013_03) 1.00 Done - Shared
0018 0.88 ATPA - ATPB decreasing evalue Δgene:(1, 20) A:(1E-80, 8) B:(1E-80, 8) (2013_03) 1.00 Done - Shared
0017 0 ATPA - ATPB Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) (2013_03) Killed - Shared
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