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OPENSEQ.org
FtsZ_YcbW
Genes: A B A+B
Length: 383 180 475
Sequences: 2098 188 54
Seq/Len: 5.48 1.04 0.11
MirrorTree (Pazo et al. 2001) 0.60
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.02 0.02 0.00
2 0.02 0.02 0.00
5 0.02 0.02 0.00
10 0.02 0.02 0.00
20 0.02 0.02 0.00
100 0.03 0.02 0.01
∞ 0.05 0.02 0.10
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results (Scaled_score > 1):
Figure 4: The darker and larger the blue dots, the higher strength in coevolution. 		Inter Residue pairs sorted by strength in coevolution signal:
i j Scaled Score Prob I_Prob
214_R 138_C 1.56 0.24 0.00
16_I 81_A 1.48 0.21 0.00
218_S 94_K 1.45 0.20 0.00
244_I 53_D 1.43 0.19 0.00
233_E 140_L 1.43 0.19 0.00
98_V 133_E 1.34 0.17 0.00
98_V 139_L 1.31 0.16 0.00
156_H 137_L 1.30 0.15 0.00
294_I 155_G 1.24 0.14 0.00
176_I 82_L 1.23 0.14 0.00
237_E 5_P 1.22 0.13 0.00
80_A 75_A 1.21 0.13 0.00
116_V 34_F 1.20 0.13 0.00
92_L 53_D 1.20 0.13 0.00
95_A 119_D 1.19 0.13 0.00
245_S 136_A 1.17 0.12 0.00
166_D 58_F 1.17 0.12 0.00
227_S 141_A 1.16 0.12 0.00
214_R 53_D 1.15 0.12 0.00
297_S 155_G 1.11 0.11 0.00
123_L 53_D 1.11 0.11 0.00
180_D 92_M 1.11 0.11 0.00
115_V 70_S 1.10 0.11 0.00
298_L 82_L 1.10 0.11 0.00
285_F 53_D 1.09 0.11 0.00
252_I 84_A 1.09 0.11 0.00
294_I 142_Q 1.09 0.11 0.00
244_I 138_C 1.08 0.10 0.00
273_D 88_L 1.07 0.10 0.00
227_S 69_L 1.07 0.10 0.00
98_V 29_L 1.05 0.10 0.00
60_I 35_A 1.04 0.10 0.00
299_D 95_S 1.03 0.10 0.00
98_V 157_A 1.03 0.10 0.00
88_L 25_A 1.03 0.10 0.00
227_S 62_E 1.03 0.10 0.00
296_T 86_R 1.01 0.09 0.00
32_E 155_G 1.00 0.09 0.00
41_A 34_F 0.99 0.09 0.00
145_F 113_A 0.98 0.09 0.00
145_F 70_S 0.98 0.09 0.00
191_G 34_F 0.98 0.09 0.00
58_I 155_G 0.97 0.09 0.00
306_L 71_K 0.97 0.09 0.00
184_A 165_L 0.97 0.09 0.00
273_D 62_E 0.97 0.09 0.00
177_S 130_E 0.96 0.08 0.00
272_L 155_G 0.96 0.08 0.00
227_S 94_K 0.95 0.08 0.00
89_R 142_Q 0.95 0.08 0.00
273_D 141_A 0.95 0.08 0.00
64_I 107_P 0.94 0.08 0.00
82_D 61_E 0.94 0.08 0.00
258_R 93_P 0.94 0.08 0.00
190_K 141_A 0.94 0.08 0.00
143_M 91_Q 0.94 0.08 0.00
82_D 88_L 0.93 0.08 0.00
140_K 137_L 0.93 0.08 0.00
116_V 82_L 0.93 0.08 0.00
40_F 126_L 0.93 0.08 0.00
272_L 77_L 0.92 0.08 0.00
173_G 137_L 0.92 0.08 0.00
80_A 103_E 0.92 0.08 0.00
320_R 26_N 0.92 0.08 0.00
306_L 81_A 0.91 0.08 0.00
258_R 87_Y 0.91 0.08 0.00
303_N 41_P 0.91 0.08 0.00
300_P 137_L 0.90 0.07 0.00
82_D 73_Q 0.90 0.07 0.00
285_F 87_Y 0.90 0.07 0.00
101_A 126_L 0.90 0.07 0.00
293_V 135_A 0.90 0.07 0.00
218_S 156_D 0.90 0.07 0.00
51_K 152_M 0.90 0.07 0.00
151_T 119_D 0.90 0.07 0.00
262_V 49_F 0.90 0.07 0.00
119_V 24_L 0.89 0.07 0.00
184_A 92_M 0.89 0.07 0.00
119_V 73_Q 0.89 0.07 0.00
296_T 87_Y 0.88 0.07 0.00
176_I 77_L 0.88 0.07 0.00
283_R 38_M 0.88 0.07 0.00
228_G 87_Y 0.88 0.07 0.00
269_D 35_A 0.88 0.07 0.00
282_I 150_R 0.88 0.07 0.00
282_I 160_I 0.88 0.07 0.00
233_E 171_V 0.88 0.07 0.00
297_S 82_L 0.87 0.07 0.00
89_R 58_F 0.87 0.07 0.00
32_E 111_D 0.87 0.07 0.00
297_S 154_L 0.87 0.07 0.00
190_K 75_A 0.86 0.07 0.00
219_E 87_Y 0.86 0.07 0.00
298_L 154_L 0.86 0.07 0.00
294_I 76_E 0.86 0.07 0.00
206_M 83_V 0.86 0.07 0.00
214_R 55_A 0.86 0.07 0.00
88_L 52_D 0.86 0.07 0.00
294_I 82_L 0.86 0.07 0.00
116_V 32_S 0.85 0.07 0.00
206_M 40_T 0.85 0.07 0.00
9_N 110_G 0.85 0.07 0.00
272_L 69_L 0.85 0.07 0.00
156_H 163_D 0.85 0.07 0.00
245_S 100_S 0.85 0.07 0.00
176_I 14_D 0.85 0.07 0.00
206_M 27_G 0.85 0.07 0.00
56_Q 83_V 0.85 0.07 0.00
121_K 134_N 0.85 0.07 0.00
82_D 144_C 0.85 0.07 0.00
203_P 30_F 0.85 0.07 0.00
121_K 35_A 0.85 0.07 0.00
80_A 13_Y 0.85 0.07 0.00
51_K 43_A 0.85 0.07 0.00
75_E 62_E 0.84 0.07 0.00
320_R 94_K 0.84 0.07 0.00
60_I 52_D 0.83 0.07 0.00
57_T 165_L 0.83 0.07 0.00
283_R 20_M 0.83 0.07 0.00
123_L 134_N 0.83 0.07 0.00
9_N 68_N 0.83 0.07 0.00
227_S 76_E 0.83 0.07 0.00
317_M 141_A 0.83 0.07 0.00
184_A 2_R 0.82 0.06 0.00
16_I 158_I 0.82 0.06 0.00
178_L 95_S 0.82 0.06 0.00
182_F 95_S 0.82 0.06 0.00
144_A 126_L 0.82 0.06 0.00
95_A 85_I 0.82 0.06 0.00
10_D 158_I 0.81 0.06 0.00
41_A 52_D 0.81 0.06 0.00
10_D 6_D 0.81 0.06 0.00
79_N 163_D 0.81 0.06 0.00
175_G 51_V 0.81 0.06 0.00
297_S 77_L 0.81 0.06 0.00
60_I 101_H 0.81 0.06 0.00
91_A 17_H 0.80 0.06 0.00
95_A 171_V 0.80 0.06 0.00
10_D 47_A 0.80 0.06 0.00
Figure 5: The i (protein A) and j (protein B) are positions as given in the query sequences.

Scaled Score = raw_score/average(raw_scores)
Prob = P(contact | scaled_score, seq/len)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)
ID Seq/Len Name Options I_Prob Status
14330 FtsZ_YcbW Δgene:(1, ∞) A:(1E-06, 8) B:(1E-06, 8) msa: HHblits (2015_06) Running - Shared
14298 0.11 FtsZ_YcbW Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) 0.00 Done - Shared
14037 0 Alan Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
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