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OPENSEQ.org
P63092-p07550
Genes: A B A+B
Length: 413 394 807
Sequences: 258 814 1
Seq/Len: 0.62 2.07 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.01 0.06 0.00
2 0.01 0.07 0.00
5 0.01 0.07 0.00
10 0.01 0.07 0.00
20 0.01 0.08 0.00
100 0.03 0.11 0.00
∞ 0.07 0.15 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
2484 0.2 beta2_gas_2 Δgene:(1, ∞) A:(1E-02, 8) B:(1E-02, 8) msa: Jackhmmer (2015_03) 0.00 Done
2465 0.18 beta2_gas_1 Δgene:(1, ∞) A:(1E-20, 8) B:(1E-02, 8) msa: Jackhmmer (2015_03) 0.00 Done
1318 0.01 P63092-p07550 Δgene:(1, ∞) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2013_03) Killed - Shared
1317 0 P63092-p07550 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2013_03) Killed - Shared
1316 0.03 P63092-p07550 Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (2014_03) Killed - Shared
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