May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
kleAvkleC
Genes: A B A+B
Length: 45 529 574
Sequences: 1 413 1
Seq/Len: 0.02 0.78 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.00 0.00
2 0.01 0.00
5 0.01 0.00
10 0.01 0.00
20 0.02 0.00
100 0.02 0.00
∞ 0.09 0.00
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
12299 kleAvkleC Δgene:(1, 20) A:(1E-02, 1) B:(1E-02, 1) msa: Jackhmmer (r132) Running - Shared
12292 0 kleAvkleC Δgene:(1, ∞) A:(1E-02, 1) B:(1E-02, 1) msa: HHblits (2015_06) Killed - Shared
12289 0 kleAvkleC Δgene:(1, 20) A:(1E-02, 4) B:(1E-02, 4) msa: HHblits (2015_06) Killed - Shared
12288 0 kleAvkleC Δgene:(1, 5) A:(1E-80, 4) B:(1E-80, 4) msa: HHblits (2015_06) Killed - Shared
12287 0 kleAvkleC Δgene:(1, 5) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
12286 0 kleAvkleC Δgene:(1, 20) A:(1E-80, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
12285 0 kleAvkleC Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
Page generated in 0.0549 seconds.