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OPENSEQ.org
IpaH-GBP1_complexCoEv
Genes: A B A+B
Length: 545 592 1137
Sequences: 369 298 1
Seq/Len: 0.68 0.5 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.
Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.09 0.21 0.00
2 0.10 0.23 0.00
5 0.11 0.23 0.00
10 0.12 0.23 0.00
20 0.12 0.23 0.00
100 0.14 0.23 0.00
∞ 0.23 0.24 0.00
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!
GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
ID Seq/Len Name Options I_Prob Status
11311 0 IpaH-GBP1_complexCoEv Δgene:(1, 1) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed - Shared
11310 0 IpaH-GBP1_complexCoEv Δgene:(1, 100) A:(1E-06, 8) B:(1E-06, 8) msa: HHblits (2015_06) Killed - Shared
11309 0 IpaH-GBP1_complexCoEv Δgene:(1, 10) A:(1E-02, 8) B:(1E-02, 8) msa: HHblits (2015_06) Killed - Shared
11307 0 IpaH-GBP1_complexCoEv Δgene:(1, 20) A:(1E-06, 8) B:(1E-06, 8) msa: HHblits (2015_06) Killed - Shared
11280 0 IpaH-GBP1_complexCoEv Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
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