May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

IF1 - RARA
UniProt:
Length: 519
Sequences: 1347
Seq/Len: 2.69
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
42_K 139_G 0.89 0.00
58_T 214_T 0.81 0.00
46_R 372_L 0.78 0.00
50_G 139_G 0.70 0.00
32_V 18_A 0.68 0.00
43_N 106_R 0.67 0.00
12_T 296_L 0.66 0.00
46_R 259_I 0.65 0.00
7_I 291_V 0.65 0.00
9_M 425_G 0.65 0.00
32_V 426_K 0.64 0.00
50_G 133_G 0.64 0.00
55_V 215_L 0.64 0.00
71_S 91_I 0.64 0.00
64_K 134_T 0.63 0.00
56_E 174_L 0.63 0.00
13_V 435_A 0.62 0.00
31_V 360_A 0.62 0.00
13_V 257_D 0.62 0.00
46_R 343_A 0.61 0.00
14_L 90_E 0.61 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0617 seconds.