May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

TRMD - YFIH
UniProt:
Length: 498
Sequences: 1352
Seq/Len: 2.78
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
178_C 152_W 1.08 0.02
152_V 102_V 0.75 0.01
169_D 19_S 0.74 0.01
169_D 51_R 0.74 0.01
81_G 58_G 0.73 0.01
54_Y 216_C 0.73 0.01
128_D 168_V 0.72 0.01
114_R 133_G 0.71 0.01
139_S 108_L 0.70 0.01
185_E 7_P 0.70 0.01
146_M 39_H 0.70 0.01
64_V 162_F 0.70 0.01
178_C 19_S 0.70 0.01
11_E 121_A 0.69 0.01
212_S 33_S 0.69 0.01
61_L 193_D 0.69 0.01
42_T 91_S 0.68 0.01
114_R 104_T 0.67 0.01
112_C 151_A 0.66 0.01
20_G 198_A 0.66 0.01
123_I 167_E 0.65 0.01
54_Y 110_V 0.65 0.00
109_I 168_V 0.64 0.00
222_E 225_F 0.63 0.00
169_D 235_R 0.63 0.00
156_I 59_N 0.63 0.00
32_S 174_A 0.62 0.00
210_K 41_G 0.62 0.00
198_S 227_Y 0.61 0.00
101_E 214_D 0.61 0.00
7_S 218_Y 0.61 0.00
114_R 103_M 0.60 0.00
45_R 18_C 0.59 0.00
180_H 127_W 0.59 0.00
45_R 56_A 0.59 0.00
88_S 183_F 0.59 0.00
169_D 233_T 0.58 0.00
122_V 154_G 0.58 0.00
173_E 32_D 0.58 0.00
47_R 46_H 0.58 0.00
47_R 193_D 0.58 0.00
207_W 127_W 0.58 0.00
102_L 227_Y 0.58 0.00
61_L 78_L 0.58 0.00
200_N 194_I 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0196 seconds.